EuRBPDB

Description

Ensembl ID: MGP_CASTEiJ_G0034648 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Minus strand
Length: 74386 bases
Position: chrX:30829984-30904369
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0096167	ResIII	PF04851.15	4.4e-12	1	1
MGP_CASTEiJ_P0096166	ResIII	PF04851.15	1.7e-11	1	1
MGP_CASTEiJ_P0096164	ResIII	PF04851.15	2.3e-11	1	1
MGP_CASTEiJ_P0096163	ResIII	PF04851.15	2.3e-11	1	1
MGP_CASTEiJ_P0096165	ResIII	PF04851.15	2.3e-11	1	1
MGP_CASTEiJ_P0096163	DEAD	PF00270.29	2e-06	1	1
MGP_CASTEiJ_P0096165	DEAD	PF00270.29	2e-06	1	1
MGP_CASTEiJ_P0096164	DEAD	PF00270.29	2.1e-06	1	1
MGP_CASTEiJ_P0096167	DEAD	PF00270.29	2.4e-06	1	1
MGP_CASTEiJ_P0096166	DEAD	PF00270.29	7.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0096165	-	4669	-	MGP_CASTEiJ_P0096165	1003 (aa)	-	-
MGP_CASTEiJ_T0096164	-	3862	-	MGP_CASTEiJ_P0096164	1019 (aa)	-	-
MGP_CASTEiJ_T0096167	-	1965	-	MGP_CASTEiJ_P0096167	381 (aa)	-	-
MGP_CASTEiJ_T0096166	-	2171	-	MGP_CASTEiJ_P0096166	723 (aa)	-	-
MGP_CASTEiJ_T0096163	-	3895	XM_006541563	MGP_CASTEiJ_P0096163	1003 (aa)	XP_006541626	Q6PGB8
MGP_CASTEiJ_T0096169	-	409	-	-	- (aa)	-	-
MGP_CASTEiJ_T0096168	-	360	-	MGP_CASTEiJ_P0096168	117 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0034648	Smarca1	59	31.875	MGP_CASTEiJ_G0027207	Rad54b	52	32.773
MGP_CASTEiJ_G0034648	Smarca1	64	50.610	MGP_CASTEiJ_G0024296	Hells	53	54.902