EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0034716 (Gene tree)
Gene ID: -
Gene Symbol: Zic3
Alias: Bn|Ka
Full Name: zinc finger protein of the cerebellum 3
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 72023 bases
Position: chrX:39759065-39831087
Accession: 106676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0096361	zf-C2H2	PF00096.26	8.7e-23	1	4
MGP_CASTEiJ_P0096361	zf-C2H2	PF00096.26	8.7e-23	2	4
MGP_CASTEiJ_P0096361	zf-C2H2	PF00096.26	8.7e-23	3	4
MGP_CASTEiJ_P0096361	zf-C2H2	PF00096.26	8.7e-23	4	4
MGP_CASTEiJ_P0096360	zf-C2H2	PF00096.26	3.5e-21	1	4
MGP_CASTEiJ_P0096360	zf-C2H2	PF00096.26	3.5e-21	2	4
MGP_CASTEiJ_P0096360	zf-C2H2	PF00096.26	3.5e-21	3	4
MGP_CASTEiJ_P0096360	zf-C2H2	PF00096.26	3.5e-21	4	4
MGP_CASTEiJ_P0096362	zf-C2H2	PF00096.26	2.1e-20	1	4
MGP_CASTEiJ_P0096362	zf-C2H2	PF00096.26	2.1e-20	2	4
MGP_CASTEiJ_P0096362	zf-C2H2	PF00096.26	2.1e-20	3	4
MGP_CASTEiJ_P0096362	zf-C2H2	PF00096.26	2.1e-20	4	4
MGP_CASTEiJ_P0096361	zf-met	PF12874.7	8.1e-05	1	1
MGP_CASTEiJ_P0096362	zf-met	PF12874.7	0.00079	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0096359	-	566	XM_006527973	MGP_CASTEiJ_P0096359	89 (aa)	XP_006528036	Q62521
MGP_CASTEiJ_T0096363	-	834	-	MGP_CASTEiJ_P0096363	253 (aa)	-	-
MGP_CASTEiJ_T0096362	-	1955	-	MGP_CASTEiJ_P0096362	456 (aa)	-	-
MGP_CASTEiJ_T0096361	-	3005	-	MGP_CASTEiJ_P0096361	246 (aa)	-	-
MGP_CASTEiJ_T0096360	-	3974	-	MGP_CASTEiJ_P0096360	466 (aa)	-	-

Gene Model

Click here to download MGP_CASTEiJ_G0034716's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0034716's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0034716	Zic3	64	33.540	MGP_CASTEiJ_G0026106	Zfp64	56	33.540
MGP_CASTEiJ_G0034716	Zic3	64	38.849	MGP_CASTEiJ_G0021808	Snai2	50	38.776