EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CASTEiJ_G0035010 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_casteij
Status: putative
Strand: Plus strand
Length: 2971 bases
Position: chrX:100814066-100817036
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CASTEiJ_P0097463	RRM_5	PF13893.6	7.3e-12	1	2
MGP_CASTEiJ_P0097463	RRM_5	PF13893.6	7.3e-12	2	2
MGP_CASTEiJ_P0097464	RRM_5	PF13893.6	7.3e-12	1	2
MGP_CASTEiJ_P0097464	RRM_5	PF13893.6	7.3e-12	2	2
MGP_CASTEiJ_P0097463	RRM_1	PF00076.22	1.2e-77	1	4
MGP_CASTEiJ_P0097463	RRM_1	PF00076.22	1.2e-77	2	4
MGP_CASTEiJ_P0097463	RRM_1	PF00076.22	1.2e-77	3	4
MGP_CASTEiJ_P0097463	RRM_1	PF00076.22	1.2e-77	4	4
MGP_CASTEiJ_P0097464	RRM_1	PF00076.22	1.2e-77	1	4
MGP_CASTEiJ_P0097464	RRM_1	PF00076.22	1.2e-77	2	4
MGP_CASTEiJ_P0097464	RRM_1	PF00076.22	1.2e-77	3	4
MGP_CASTEiJ_P0097464	RRM_1	PF00076.22	1.2e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CASTEiJ_T0097464	-	2243	-	MGP_CASTEiJ_P0097464	381 (aa)	-	-
MGP_CASTEiJ_T0097463	-	2434	-	MGP_CASTEiJ_P0097463	381 (aa)	-	Q8C7D3

Gene Model

Click here to download MGP_CASTEiJ_G0035010's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CASTEiJ_G0035010's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CASTEiJ_G0035010	Pabpc5	94	65.556	MGP_CASTEiJ_G0027867	Pabpc4	100	68.794
MGP_CASTEiJ_G0035010	Pabpc5	94	37.037	MGP_CASTEiJ_G0027579	Elavl2	89	37.037
MGP_CASTEiJ_G0035010	Pabpc5	63	34.483	MGP_CASTEiJ_G0033906	Celf6	51	34.483
MGP_CASTEiJ_G0035010	Pabpc5	96	57.967	MGP_CASTEiJ_G0026358	Pabpc4l	97	57.865
MGP_CASTEiJ_G0035010	Pabpc5	96	61.389	MGP_CASTEiJ_G0023577	Pabpc2	59	61.236
MGP_CASTEiJ_G0035010	Pabpc5	61	36.709	MGP_CASTEiJ_G0026707	Celf3	61	30.526
MGP_CASTEiJ_G0035010	Pabpc5	70	35.955	MGP_CASTEiJ_G0016890	Celf5	66	34.426
MGP_CASTEiJ_G0035010	Pabpc5	96	56.944	MGP_CASTEiJ_G0026012	Pabpc1l	64	57.022
MGP_CASTEiJ_G0035010	Pabpc5	96	63.158	MGP_CASTEiJ_G0021054	Pabpc1	56	63.291
MGP_CASTEiJ_G0035010	Pabpc5	93	33.333	MGP_CASTEiJ_G0030063	Tia1	84	34.247
MGP_CASTEiJ_G0035010	Pabpc5	95	58.445	MGP_CASTEiJ_G0022384	Pabpc6	59	58.470
MGP_CASTEiJ_G0035010	Pabpc5	97	61.864	MGP_CASTEiJ_G0027214	-	58	61.864