EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0016082 (Gene tree)
Gene ID: -
Gene Symbol: Hdlbp
Alias: 1110005P14Rik|AA960365|AI118566|D1Ertd101e
Full Name: high density lipoprotein (HDL) binding protein
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 74404 bases
Position: chr1:101838184-101912587
Accession: 99256
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	1	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	2	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	3	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	4	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	5	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	6	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	7	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	8	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	9	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	10	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	11	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	12	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	13	14
MGP_CBAJ_P0021164	KH_1	PF00013.29	2.2e-186	14	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	1	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	2	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	3	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	4	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	5	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	6	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	7	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	8	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	9	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	10	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	11	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	12	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	13	14
MGP_CBAJ_P0021165	KH_1	PF00013.29	2.2e-186	14	14
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	1	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	2	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	3	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	4	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	5	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	6	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	7	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	8	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	9	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	10	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	11	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	12	13
MGP_CBAJ_P0021166	KH_1	PF00013.29	4.4e-175	13	13
MGP_CBAJ_P0021169	KH_1	PF00013.29	1.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0021169	-	740	-	MGP_CBAJ_P0021169	178 (aa)	-	-
MGP_CBAJ_T0021168	-	528	-	MGP_CBAJ_P0021168	22 (aa)	-	-
MGP_CBAJ_T0021167	-	2172	-	-	- (aa)	-	-
MGP_CBAJ_T0021166	-	3808	-	MGP_CBAJ_P0021166	1199 (aa)	-	-
MGP_CBAJ_T0021165	-	4427	-	MGP_CBAJ_P0021165	1268 (aa)	-	-
MGP_CBAJ_T0021164	-	6231	XM_006529074	MGP_CBAJ_P0021164	1268 (aa)	XP_006529137	Q8VDJ3
MGP_CBAJ_T0021170	-	671	-	MGP_CBAJ_P0021170	141 (aa)	-	-
MGP_CBAJ_T0021171	-	850	-	MGP_CBAJ_P0021171	129 (aa)	-	-
MGP_CBAJ_T0021172	-	630	-	-	- (aa)	-	-
MGP_CBAJ_T0021173	-	341	-	MGP_CBAJ_P0021173	22 (aa)	-	-
MGP_CBAJ_T0021174	-	3221	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0016082's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0016082's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0016082	Hdlbp	94	50.165	MGP_CBAJ_G0035704	Gm382	95	50.165
MGP_CBAJ_G0016082	Hdlbp	91	46.008	MGP_CBAJ_G0035705	4921511C20Rik	100	46.008