EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0017123 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp3
Alias: AlphaCP-3
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 205023 bases
Position: chr10:82859636-83064658
Accession: 1890470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0025544	KH_1	PF00013.29	2.9e-55	1	3
MGP_CBAJ_P0025544	KH_1	PF00013.29	2.9e-55	2	3
MGP_CBAJ_P0025544	KH_1	PF00013.29	2.9e-55	3	3
MGP_CBAJ_P0025541	KH_1	PF00013.29	3e-55	1	3
MGP_CBAJ_P0025541	KH_1	PF00013.29	3e-55	2	3
MGP_CBAJ_P0025541	KH_1	PF00013.29	3e-55	3	3
MGP_CBAJ_P0025543	KH_1	PF00013.29	3e-55	1	3
MGP_CBAJ_P0025543	KH_1	PF00013.29	3e-55	2	3
MGP_CBAJ_P0025543	KH_1	PF00013.29	3e-55	3	3
MGP_CBAJ_P0025546	KH_1	PF00013.29	7.7e-19	1	1
MGP_CBAJ_P0025544	KH_2	PF07650.17	3.9e-15	1	1
MGP_CBAJ_P0025541	KH_2	PF07650.17	3.9e-15	1	1
MGP_CBAJ_P0025543	KH_2	PF07650.17	3.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0025541	-	2013	XM_006513916	MGP_CBAJ_P0025541	371 (aa)	XP_006513979	P57722
MGP_CBAJ_T0025543	-	1748	-	MGP_CBAJ_P0025543	371 (aa)	-	-
MGP_CBAJ_T0025542	-	1736	-	-	- (aa)	-	-
MGP_CBAJ_T0025545	-	1095	-	-	- (aa)	-	-
MGP_CBAJ_T0025544	-	2544	-	MGP_CBAJ_P0025544	370 (aa)	-	-
MGP_CBAJ_T0025547	-	944	-	MGP_CBAJ_P0025547	226 (aa)	-	-
MGP_CBAJ_T0025546	-	605	-	MGP_CBAJ_P0025546	160 (aa)	-	-
MGP_CBAJ_T0025549	-	337	-	-	- (aa)	-	-
MGP_CBAJ_T0025548	-	717	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0017123's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0017123's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0017123	Pcbp3	72	40.351	MGP_CBAJ_G0019432	Nova1	59	40.351
MGP_CBAJ_G0017123	Pcbp3	85	31.973	MGP_CBAJ_G0025298	Fubp3	77	31.973
MGP_CBAJ_G0017123	Pcbp3	89	36.765	MGP_CBAJ_G0022369	Igf2bp2	62	33.333
MGP_CBAJ_G0017123	Pcbp3	99	65.873	MGP_CBAJ_G0030641	Pcbp1	99	66.484
MGP_CBAJ_G0017123	Pcbp3	85	69.811	MGP_CBAJ_G0034883	Pcbp4	93	70.652
MGP_CBAJ_G0017123	Pcbp3	86	35.000	MGP_CBAJ_G0030390	Igf2bp3	59	33.813
MGP_CBAJ_G0017123	Pcbp3	79	41.667	MGP_CBAJ_G0020342	Hnrnpk	59	51.316
MGP_CBAJ_G0017123	Pcbp3	99	82.143	MGP_CBAJ_G0022117	Pcbp2	99	78.338
MGP_CBAJ_G0017123	Pcbp3	66	33.582	MGP_CBAJ_G0018719	Igf2bp1	60	33.333
MGP_CBAJ_G0017123	Pcbp3	66	31.250	MGP_CBAJ_G0027664	Fubp1	72	33.019