EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0017747 (Gene tree)
Gene ID: -
Gene Symbol: Ddx56
Alias: 2600001H07Rik|D11Ertd619e|NOH61|Noh61
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 8854 bases
Position: chr11:3852614-3861467
Accession: 1277172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0027644	ResIII	PF04851.15	9.5e-07	1	1
MGP_CBAJ_P0027644	DEAD	PF00270.29	6.9e-40	1	1
MGP_CBAJ_P0027646	DEAD	PF00270.29	5.8e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0027644	-	1956	XM_011243731	MGP_CBAJ_P0027644	546 (aa)	XP_011242033	Q9D0R4
MGP_CBAJ_T0027645	-	527	-	-	- (aa)	-	-
MGP_CBAJ_T0027646	-	764	-	MGP_CBAJ_P0027646	237 (aa)	-	-
MGP_CBAJ_T0027647	-	621	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0017747's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0017747's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0017747	Ddx56	99	35.887	MGP_CBAJ_G0031075	Ddx47	86	38.889
MGP_CBAJ_G0017747	Ddx56	61	32.051	MGP_CBAJ_G0033503	Ddx39	74	34.969
MGP_CBAJ_G0017747	Ddx56	82	50.000	MGP_CBAJ_G0019324	Ddx1	53	50.847
MGP_CBAJ_G0017747	Ddx56	92	31.004	MGP_CBAJ_G0022380	Eif4a2	62	31.646
MGP_CBAJ_G0017747	Ddx56	66	30.366	MGP_CBAJ_G0035227	Ddx3x	52	30.000
MGP_CBAJ_G0017747	Ddx56	80	33.493	MGP_CBAJ_G0018588	Ddx52	61	30.597
MGP_CBAJ_G0017747	Ddx56	98	33.065	MGP_CBAJ_G0026601	Ddx27	53	31.019
MGP_CBAJ_G0017747	Ddx56	94	32.627	MGP_CBAJ_G0033366	Ddx49	59	33.175
MGP_CBAJ_G0017747	Ddx56	66	30.789	MGP_CBAJ_G0016656	D1Pas1	52	30.159