EuRBPDB

Description

Ensembl ID: MGP_CBAJ_G0017975 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnph1
Alias: AI642080|E430005G16Rik|Hnrnph|Hnrph|Hnrph1|Hnrph1 {ECO:0000313|EMBL:AAH42187.2,GN ECO:0000313|MGI:MGI:1891925}
Full Name: heterogeneous nuclear ribonucleoprotein H1
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 9539 bases
Position: chr11:53385888-53395426
Accession: 1891925
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0028529	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_CBAJ_P0028530	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_CBAJ_P0028535	zf-RNPHF	PF08080.12	1.5e-22	1	1
MGP_CBAJ_P0028529	RRM_1	PF00076.22	2e-32	1	3
MGP_CBAJ_P0028529	RRM_1	PF00076.22	2e-32	2	3
MGP_CBAJ_P0028529	RRM_1	PF00076.22	2e-32	3	3
MGP_CBAJ_P0028530	RRM_1	PF00076.22	2e-32	1	3
MGP_CBAJ_P0028530	RRM_1	PF00076.22	2e-32	2	3
MGP_CBAJ_P0028530	RRM_1	PF00076.22	2e-32	3	3
MGP_CBAJ_P0028535	RRM_1	PF00076.22	2.5e-32	1	3
MGP_CBAJ_P0028535	RRM_1	PF00076.22	2.5e-32	2	3
MGP_CBAJ_P0028535	RRM_1	PF00076.22	2.5e-32	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0028539	-	1724	-	-	- (aa)	-	-
MGP_CBAJ_T0028538	-	582	-	-	- (aa)	-	-
MGP_CBAJ_T0028529	-	2427	XM_006533875	MGP_CBAJ_P0028529	449 (aa)	XP_006533938	O35737
MGP_CBAJ_T0028533	-	4002	-	-	- (aa)	-	-
MGP_CBAJ_T0028532	-	581	-	-	- (aa)	-	-
MGP_CBAJ_T0028531	-	4577	-	-	- (aa)	-	-
MGP_CBAJ_T0028530	-	2225	-	MGP_CBAJ_P0028530	449 (aa)	-	-
MGP_CBAJ_T0028537	-	860	-	-	- (aa)	-	-
MGP_CBAJ_T0028536	-	1116	-	-	- (aa)	-	-
MGP_CBAJ_T0028535	-	2126	-	MGP_CBAJ_P0028535	472 (aa)	-	-
MGP_CBAJ_T0028534	-	870	-	-	- (aa)	-	-
MGP_CBAJ_T0028542	-	914	-	-	- (aa)	-	-
MGP_CBAJ_T0028543	-	163	-	-	- (aa)	-	-
MGP_CBAJ_T0028540	-	832	-	-	- (aa)	-	-
MGP_CBAJ_T0028541	-	582	-	-	- (aa)	-	-
MGP_CBAJ_T0028546	-	677	-	-	- (aa)	-	-
MGP_CBAJ_T0028544	-	159	-	-	- (aa)	-	-
MGP_CBAJ_T0028545	-	816	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0017975	Hnrnph1	90	60.923	MGP_CBAJ_G0017043	Hnrnph3	99	59.673
MGP_CBAJ_G0017975	Hnrnph1	57	78.723	MGP_CBAJ_G0024400	-	94	78.723
MGP_CBAJ_G0017975	Hnrnph1	60	64.474	MGP_CBAJ_G0029379	Grsf1	92	65.333