EuRBPDB

Description

Ensembl ID: MGP_CBAJ_G0017995 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpab
Alias: 3010025C11Rik|CBF-A|Cbf-a|Cgbfa|Hnrpab|Hnrpab {ECO:0000313|EMBL:EDL33661.1,GN ECO:0000313|MGI:MGI:1330294}|Hnrpab {ECO:0000313|EMBL:EDL33663.1,GN ECO:0000313|MGI:MGI:1330294}
Full Name: heterogeneous nuclear ribonucleoprotein A/B
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 6755 bases
Position: chr11:54842140-54848894
Accession: 1330294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0028618	CBFNT	PF08143.11	3.2e-19	1	1
MGP_CBAJ_P0028619	CBFNT	PF08143.11	3.7e-19	1	1
MGP_CBAJ_P0028620	CBFNT	PF08143.11	4.2e-19	1	1
MGP_CBAJ_P0028618	RRM_1	PF00076.22	6.4e-34	1	2
MGP_CBAJ_P0028618	RRM_1	PF00076.22	6.4e-34	2	2
MGP_CBAJ_P0028619	RRM_1	PF00076.22	8.5e-34	1	2
MGP_CBAJ_P0028619	RRM_1	PF00076.22	8.5e-34	2	2
MGP_CBAJ_P0028620	RRM_1	PF00076.22	1e-33	1	2
MGP_CBAJ_P0028620	RRM_1	PF00076.22	1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0028620	-	1437	-	MGP_CBAJ_P0028620	332 (aa)	-	-
MGP_CBAJ_T0028618	-	2370	-	MGP_CBAJ_P0028618	285 (aa)	-	Q99020
MGP_CBAJ_T0028619	-	2013	-	MGP_CBAJ_P0028619	311 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0017995	Hnrnpab	70	48.039	MGP_CBAJ_G0018650	Msi2	100	52.212
MGP_CBAJ_G0017995	Hnrnpab	79	40.800	MGP_CBAJ_G0029632	Msi1	58	48.052
MGP_CBAJ_G0017995	Hnrnpab	57	35.882	MGP_CBAJ_G0020336	Hnrnpa0	58	35.882
MGP_CBAJ_G0017995	Hnrnpab	53	33.333	MGP_CBAJ_G0033001	Elavl1	50	33.333
MGP_CBAJ_G0017995	Hnrnpab	82	32.099	MGP_CBAJ_G0028793	Tardbp	86	33.146
MGP_CBAJ_G0017995	Hnrnpab	64	37.368	MGP_CBAJ_G0030402	Hnrnpa2b1	61	38.068
MGP_CBAJ_G0017995	Hnrnpab	79	72.052	MGP_CBAJ_G0029449	Hnrnpd	100	88.000
MGP_CBAJ_G0017995	Hnrnpab	55	33.846	MGP_CBAJ_G0020550	Gm17190	52	34.351
MGP_CBAJ_G0017995	Hnrnpab	65	31.414	MGP_CBAJ_G0034556	Celf6	66	32.500
MGP_CBAJ_G0017995	Hnrnpab	67	40.351	MGP_CBAJ_G0017227	Dazap1	99	40.588
MGP_CBAJ_G0017995	Hnrnpab	82	58.419	MGP_CBAJ_G0029451	Hnrnpdl	89	57.292
MGP_CBAJ_G0017995	Hnrnpab	51	33.846	MGP_CBAJ_G0019703	Slirp	73	33.846