EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0018887 (Gene tree)
Gene ID: -
Gene Symbol: Rab5c
Alias: AI326010|Rab5C|Rabl
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 28809 bases
Position: chr11:111148158-111176966
Accession: 105306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0032047	MMR_HSR1	PF01926.23	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0032047	-	1915	XM_006532586	MGP_CBAJ_P0032047	216 (aa)	XP_006532649	P35278
MGP_CBAJ_T0032048	-	1967	-	MGP_CBAJ_P0032048	234 (aa)	-	-
MGP_CBAJ_T0032049	-	412	-	MGP_CBAJ_P0032049	83 (aa)	-	-
MGP_CBAJ_T0032050	-	441	-	MGP_CBAJ_P0032050	34 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0018887's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0018887's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0018887	Rab5c	76	42.941	MGP_CBAJ_G0030668	Rab7	90	47.727
MGP_CBAJ_G0018887	Rab5c	81	31.250	MGP_CBAJ_G0029020	Rheb	93	31.250
MGP_CBAJ_G0018887	Rab5c	75	36.585	MGP_CBAJ_G0035514	Rab39b	77	36.585
MGP_CBAJ_G0018887	Rab5c	93	37.379	MGP_CBAJ_G0026890	Rab33b	89	37.379
MGP_CBAJ_G0018887	Rab5c	89	34.848	MGP_CBAJ_G0035911	Rab9	97	34.848
MGP_CBAJ_G0018887	Rab5c	89	40.206	MGP_CBAJ_G0021002	Rab2b	90	40.206
MGP_CBAJ_G0018887	Rab5c	78	32.544	MGP_CBAJ_G0031247	Rasl2-9	77	32.544
MGP_CBAJ_G0018887	Rab5c	83	30.000	MGP_CBAJ_G0027365	Nras	99	33.333
MGP_CBAJ_G0018887	Rab5c	81	35.227	MGP_CBAJ_G0015645	Rab23	74	35.227
MGP_CBAJ_G0018887	Rab5c	100	87.500	MGP_CBAJ_G0023588	Rab5a	100	87.500
MGP_CBAJ_G0018887	Rab5c	90	41.262	MGP_CBAJ_G0034597	Rab11a	88	49.630
MGP_CBAJ_G0018887	Rab5c	73	35.625	MGP_CBAJ_G0017083	Rab36	60	35.625
MGP_CBAJ_G0018887	Rab5c	81	44.000	MGP_CBAJ_G0032241	Rab6a	84	44.000
MGP_CBAJ_G0018887	Rab5c	75	45.062	MGP_CBAJ_G0023833	Rab18	78	45.062
MGP_CBAJ_G0018887	Rab5c	89	37.113	MGP_CBAJ_G0029638	Rab35	96	37.436
MGP_CBAJ_G0018887	Rab5c	89	35.784	MGP_CBAJ_G0019579	Rab15	95	35.784
MGP_CBAJ_G0018887	Rab5c	91	46.939	MGP_CBAJ_G0023678	Rab31	98	46.939
MGP_CBAJ_G0018887	Rab5c	86	38.806	MGP_CBAJ_G0023687	Rab12	75	36.000
MGP_CBAJ_G0018887	Rab5c	90	47.423	MGP_CBAJ_G0026654	Rab22a	98	47.423
MGP_CBAJ_G0018887	Rab5c	89	43.590	MGP_CBAJ_G0017793	Rab1a	95	43.590
MGP_CBAJ_G0018887	Rab5c	90	38.974	MGP_CBAJ_G0027714	Rab2a	92	38.974
MGP_CBAJ_G0018887	Rab5c	89	35.859	MGP_CBAJ_G0035761	Rab9b	97	35.859
MGP_CBAJ_G0018887	Rab5c	89	36.318	MGP_CBAJ_G0035341	Rab33a	85	36.318
MGP_CBAJ_G0018887	Rab5c	71	35.948	MGP_CBAJ_G0021943	Rabl2	67	35.948
MGP_CBAJ_G0018887	Rab5c	89	41.089	MGP_CBAJ_G0027089	Rab25	93	41.089
MGP_CBAJ_G0018887	Rab5c	73	31.875	MGP_CBAJ_G0018491	Rab34	62	31.875
MGP_CBAJ_G0018887	Rab5c	89	44.330	MGP_CBAJ_G0024398	Rab1b	96	44.330
MGP_CBAJ_G0018887	Rab5c	79	33.529	MGP_CBAJ_G0029787	Ran	83	33.529
MGP_CBAJ_G0018887	Rab5c	78	32.544	MGP_CBAJ_G0031143	Kras	98	30.102
MGP_CBAJ_G0018887	Rab5c	94	41.379	MGP_CBAJ_G0034845	Rab6b	98	41.379
MGP_CBAJ_G0018887	Rab5c	86	39.785	MGP_CBAJ_G0025362	Rab14	89	40.741
MGP_CBAJ_G0018887	Rab5c	55	31.707	MGP_CBAJ_G0016259	Arl8a	62	31.707
MGP_CBAJ_G0018887	Rab5c	55	31.967	MGP_CBAJ_G0030768	Arl8b	62	31.967
MGP_CBAJ_G0018887	Rab5c	73	49.682	MGP_CBAJ_G0023237	Rab11b	92	49.682
MGP_CBAJ_G0018887	Rab5c	81	33.702	MGP_CBAJ_G0032883	Hras	94	33.702
MGP_CBAJ_G0018887	Rab5c	97	86.124	MGP_CBAJ_G0017609	Rab5b	97	86.124
MGP_CBAJ_G0018887	Rab5c	78	42.012	MGP_CBAJ_G0032181	Rab30	83	42.012
MGP_CBAJ_G0018887	Rab5c	98	40.845	MGP_CBAJ_G0019092	Rab37	95	40.845