EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0019432 (Gene tree)
Gene ID: -
Gene Symbol: Nova1
Alias: 9430099M15Rik|G630039L02|Nova-1
Full Name: neuro-oncological ventral antigen 1
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 144417 bases
Position: chr12:48214532-48358948
Accession: 104297
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0034398	KH_1	PF00013.29	3.1e-46	1	3
MGP_CBAJ_P0034398	KH_1	PF00013.29	3.1e-46	2	3
MGP_CBAJ_P0034398	KH_1	PF00013.29	3.1e-46	3	3
MGP_CBAJ_P0034398	KH_2	PF07650.17	1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0034398	-	7000	-	MGP_CBAJ_P0034398	507 (aa)	XP_006516214	Q9JKN6

Gene Model

Click here to download MGP_CBAJ_G0019432's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0019432's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0019432	Nova1	57	40.541	MGP_CBAJ_G0030641	Pcbp1	70	40.541
MGP_CBAJ_G0019432	Nova1	64	73.333	MGP_CBAJ_G0031413	-	91	67.041
MGP_CBAJ_G0019432	Nova1	64	73.333	MGP_CBAJ_G0031414	-	100	67.816
MGP_CBAJ_G0019432	Nova1	56	39.062	MGP_CBAJ_G0020342	Hnrnpk	57	39.062
MGP_CBAJ_G0019432	Nova1	59	40.351	MGP_CBAJ_G0017123	Pcbp3	72	40.351
MGP_CBAJ_G0019432	Nova1	57	36.364	MGP_CBAJ_G0027664	Fubp1	50	36.364
MGP_CBAJ_G0019432	Nova1	52	38.462	MGP_CBAJ_G0034883	Pcbp4	51	38.462
MGP_CBAJ_G0019432	Nova1	53	39.726	MGP_CBAJ_G0022117	Pcbp2	69	39.726