EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0019703 (Gene tree)
Gene ID: -
Gene Symbol: Slirp
Alias: 1810035L17Rik
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 8310 bases
Position: chr12:94357585-94365894
Accession: 1916394
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0035197	RRM_1	PF00076.22	4.1e-14	1	1
MGP_CBAJ_P0035198	RRM_1	PF00076.22	8.8e-14	1	1
MGP_CBAJ_P0035199	RRM_1	PF00076.22	8.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0035199	-	335	-	MGP_CBAJ_P0035199	102 (aa)	-	-
MGP_CBAJ_T0035198	-	802	-	MGP_CBAJ_P0035198	99 (aa)	-	-
MGP_CBAJ_T0035197	-	2701	-	MGP_CBAJ_P0035197	112 (aa)	-	Q9D8T7
MGP_CBAJ_T0035200	-	362	-	MGP_CBAJ_P0035200	78 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0019703's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0019703's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0019703	Slirp	78	33.846	MGP_CBAJ_G0017227	Dazap1	89	33.846
MGP_CBAJ_G0019703	Slirp	70	33.333	MGP_CBAJ_G0029449	Hnrnpd	71	33.333
MGP_CBAJ_G0019703	Slirp	70	33.824	MGP_CBAJ_G0018650	Msi2	60	33.824
MGP_CBAJ_G0019703	Slirp	73	33.846	MGP_CBAJ_G0017995	Hnrnpab	51	33.846