EuRBPDB

Description

Ensembl ID: MGP_CBAJ_G0020342 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpk
Alias: Hnrpk|Hnrpk {ECO:0000313|EMBL:AAH89328.1,GN ECO:0000313|MGI:MGI:99894}|KBBP|NOVA|hnRNPK
Full Name: heterogeneous nuclear ribonucleoprotein K
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 17581 bases
Position: chr13:62057646-62075226
Accession: 99894
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0036902	KH_1	PF00013.29	3e-38	1	3
MGP_CBAJ_P0036902	KH_1	PF00013.29	3e-38	2	3
MGP_CBAJ_P0036902	KH_1	PF00013.29	3e-38	3	3
MGP_CBAJ_P0036900	KH_1	PF00013.29	3.9e-38	1	3
MGP_CBAJ_P0036900	KH_1	PF00013.29	3.9e-38	2	3
MGP_CBAJ_P0036900	KH_1	PF00013.29	3.9e-38	3	3
MGP_CBAJ_P0036901	KH_1	PF00013.29	3.9e-38	1	3
MGP_CBAJ_P0036901	KH_1	PF00013.29	3.9e-38	2	3
MGP_CBAJ_P0036901	KH_1	PF00013.29	3.9e-38	3	3
MGP_CBAJ_P0036903	KH_1	PF00013.29	3.2e-28	1	2
MGP_CBAJ_P0036903	KH_1	PF00013.29	3.2e-28	2	2
MGP_CBAJ_P0036913	KH_1	PF00013.29	1.8e-16	1	1
MGP_CBAJ_P0036910	KH_1	PF00013.29	5.7e-16	1	1
MGP_CBAJ_P0036907	KH_1	PF00013.29	8.9e-16	1	1
MGP_CBAJ_P0036904	KH_1	PF00013.29	2.4e-15	1	1
MGP_CBAJ_P0036917	KH_1	PF00013.29	6.5e-09	1	1
MGP_CBAJ_P0036915	KH_1	PF00013.29	5.8e-07	1	1
MGP_CBAJ_P0036912	KH_1	PF00013.29	3.4e-05	1	1
MGP_CBAJ_P0036917	KH_2	PF07650.17	0.00011	1	1
MGP_CBAJ_P0036912	KH_2	PF07650.17	0.00023	1	1
MGP_CBAJ_P0036912	ROKNT	PF08067.11	2e-27	1	1
MGP_CBAJ_P0036907	ROKNT	PF08067.11	3.2e-27	1	1
MGP_CBAJ_P0036917	ROKNT	PF08067.11	3.6e-27	1	1
MGP_CBAJ_P0036902	ROKNT	PF08067.11	8.1e-27	1	1
MGP_CBAJ_P0036904	ROKNT	PF08067.11	8.1e-27	1	1
MGP_CBAJ_P0036910	ROKNT	PF08067.11	1.8e-26	1	1
MGP_CBAJ_P0036900	ROKNT	PF08067.11	4.2e-26	1	1
MGP_CBAJ_P0036901	ROKNT	PF08067.11	4.2e-26	1	1
MGP_CBAJ_P0036913	ROKNT	PF08067.11	1.8e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0036905	-	1197	-	-	- (aa)	-	-
MGP_CBAJ_T0036904	-	2481	-	MGP_CBAJ_P0036904	433 (aa)	-	-
MGP_CBAJ_T0036907	-	1015	-	MGP_CBAJ_P0036907	303 (aa)	-	-
MGP_CBAJ_T0036906	-	1071	-	MGP_CBAJ_P0036906	356 (aa)	-	-
MGP_CBAJ_T0036901	-	2694	-	MGP_CBAJ_P0036901	471 (aa)	-	-
MGP_CBAJ_T0036900	-	2928	XM_006517103	MGP_CBAJ_P0036900	471 (aa)	XP_006517166	P61979
MGP_CBAJ_T0036903	-	2603	-	MGP_CBAJ_P0036903	402 (aa)	-	-
MGP_CBAJ_T0036902	-	2584	-	MGP_CBAJ_P0036902	447 (aa)	-	-
MGP_CBAJ_T0036910	-	911	-	MGP_CBAJ_P0036910	260 (aa)	-	-
MGP_CBAJ_T0036917	-	1053	-	MGP_CBAJ_P0036917	97 (aa)	-	-
MGP_CBAJ_T0036911	-	470	-	-	- (aa)	-	-
MGP_CBAJ_T0036909	-	748	-	-	- (aa)	-	-
MGP_CBAJ_T0036908	-	533	-	-	- (aa)	-	-
MGP_CBAJ_T0036918	-	780	-	-	- (aa)	-	-
MGP_CBAJ_T0036914	-	844	-	-	- (aa)	-	-
MGP_CBAJ_T0036915	-	487	-	MGP_CBAJ_P0036915	90 (aa)	-	-
MGP_CBAJ_T0036912	-	734	-	MGP_CBAJ_P0036912	77 (aa)	-	-
MGP_CBAJ_T0036916	-	775	-	-	- (aa)	-	-
MGP_CBAJ_T0036913	-	687	-	MGP_CBAJ_P0036913	181 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0020342	Hnrnpk	64	44.000	MGP_CBAJ_G0022117	Pcbp2	84	44.444
MGP_CBAJ_G0020342	Hnrnpk	62	41.429	MGP_CBAJ_G0034883	Pcbp4	86	32.468
MGP_CBAJ_G0020342	Hnrnpk	58	37.681	MGP_CBAJ_G0031414	-	54	37.681
MGP_CBAJ_G0020342	Hnrnpk	58	31.532	MGP_CBAJ_G0030641	Pcbp1	85	42.857
MGP_CBAJ_G0020342	Hnrnpk	59	51.316	MGP_CBAJ_G0017123	Pcbp3	79	41.667
MGP_CBAJ_G0020342	Hnrnpk	94	97.222	MGP_CBAJ_G0032121	-	98	95.528
MGP_CBAJ_G0020342	Hnrnpk	57	39.062	MGP_CBAJ_G0019432	Nova1	56	39.062