EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0021107 (Gene tree)
Gene ID: -
Gene Symbol: Pspc1
Alias: 5730470C09Rik|AI327109|AI449052|PSP1|Psp1
Full Name: paraspeckle protein 1
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 60815 bases
Position: chr14:54931762-54992576
Accession: 1913895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0039300	RRM_1	PF00076.22	3.5e-32	1	2
MGP_CBAJ_P0039300	RRM_1	PF00076.22	3.5e-32	2	2
MGP_CBAJ_P0039299	RRM_1	PF00076.22	4.9e-32	1	2
MGP_CBAJ_P0039299	RRM_1	PF00076.22	4.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0039302	-	601	-	MGP_CBAJ_P0039302	58 (aa)	-	-
MGP_CBAJ_T0039300	-	2863	-	MGP_CBAJ_P0039300	466 (aa)	-	-
MGP_CBAJ_T0039301	-	528	-	-	- (aa)	-	-
MGP_CBAJ_T0039299	-	2383	-	MGP_CBAJ_P0039299	523 (aa)	-	Q8R326

Gene Model

Click here to download MGP_CBAJ_G0021107's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0021107's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0021107	Pspc1	84	71.429	MGP_CBAJ_G0028452	Sfpq	55	65.891
MGP_CBAJ_G0021107	Pspc1	69	41.304	MGP_CBAJ_G0017221	Cirbp	68	34.247
MGP_CBAJ_G0021107	Pspc1	84	67.347	MGP_CBAJ_G0035613	Nono	80	66.230