EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0021507 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 16468 bases
Position: chr15:37498430-37514897
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0040422	PABP	PF00658.18	8.8e-33	1	1
MGP_CBAJ_P0040421	RRM_5	PF13893.6	3.6e-07	1	2
MGP_CBAJ_P0040421	RRM_5	PF13893.6	3.6e-07	2	2
MGP_CBAJ_P0040421	RRM_1	PF00076.22	2.1e-91	1	4
MGP_CBAJ_P0040421	RRM_1	PF00076.22	2.1e-91	2	4
MGP_CBAJ_P0040421	RRM_1	PF00076.22	2.1e-91	3	4
MGP_CBAJ_P0040421	RRM_1	PF00076.22	2.1e-91	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0040427	-	2888	-	-	- (aa)	-	-
MGP_CBAJ_T0040426	-	667	-	-	- (aa)	-	-
MGP_CBAJ_T0040425	-	866	-	-	- (aa)	-	-
MGP_CBAJ_T0040424	-	632	-	-	- (aa)	-	-
MGP_CBAJ_T0040423	-	725	-	-	- (aa)	-	-
MGP_CBAJ_T0040422	-	489	-	MGP_CBAJ_P0040422	117 (aa)	-	-
MGP_CBAJ_T0040421	-	2543	-	MGP_CBAJ_P0040421	609 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0021507's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0021507's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0021507	-	99	76.724	MGP_CBAJ_G0022842	Pabpc6	61	88.315
MGP_CBAJ_G0021507	-	58	40.278	MGP_CBAJ_G0033001	Elavl1	94	40.278
MGP_CBAJ_G0021507	-	57	30.065	MGP_CBAJ_G0035052	Rbms3	70	30.065
MGP_CBAJ_G0021507	-	61	30.412	MGP_CBAJ_G0029663	Rbm19	54	30.412
MGP_CBAJ_G0021507	-	57	65.217	MGP_CBAJ_G0035698	Pabpc5	96	65.057
MGP_CBAJ_G0021507	-	60	38.095	MGP_CBAJ_G0030638	Tia1	87	38.095
MGP_CBAJ_G0021507	-	59	31.250	MGP_CBAJ_G0032753	Tial1	94	31.008
MGP_CBAJ_G0021507	-	57	36.145	MGP_CBAJ_G0034128	Elavl3	92	36.145
MGP_CBAJ_G0021507	-	57	37.349	MGP_CBAJ_G0028108	Elavl2	89	37.349
MGP_CBAJ_G0021507	-	79	93.548	MGP_CBAJ_G0028401	Pabpc4	100	94.175
MGP_CBAJ_G0021507	-	57	36.145	MGP_CBAJ_G0028241	Elavl4	88	36.145
MGP_CBAJ_G0021507	-	58	69.277	MGP_CBAJ_G0026882	Pabpc4l	97	69.277
MGP_CBAJ_G0021507	-	99	76.724	MGP_CBAJ_G0024072	Pabpc2	61	87.709
MGP_CBAJ_G0021507	-	80	60.638	MGP_CBAJ_G0026528	Pabpc1l	61	75.931