EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0022842 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc6
Alias: 4932702K14Rik|AI428050|Pabpc3
Full Name: poly(A) binding protein%2C cytoplasmic 6
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 3208 bases
Position: chr17:7818697-7821904
Accession: 1914793
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0045130	PABP	PF00658.18	1.4e-26	1	1
MGP_CBAJ_P0045130	RRM_5	PF13893.6	4.3e-07	1	1
MGP_CBAJ_P0045130	RRM_1	PF00076.22	1.9e-89	1	4
MGP_CBAJ_P0045130	RRM_1	PF00076.22	1.9e-89	2	4
MGP_CBAJ_P0045130	RRM_1	PF00076.22	1.9e-89	3	4
MGP_CBAJ_P0045130	RRM_1	PF00076.22	1.9e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0045130	-	3208	-	MGP_CBAJ_P0045130	643 (aa)	-	Q9D4E6

Gene Model

Click here to download MGP_CBAJ_G0022842's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0022842's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0022842	Pabpc6	99	67.551	MGP_CBAJ_G0028401	Pabpc4	100	87.379
MGP_CBAJ_G0022842	Pabpc6	58	64.497	MGP_CBAJ_G0026882	Pabpc4l	98	64.497
MGP_CBAJ_G0022842	Pabpc6	99	70.186	MGP_CBAJ_G0024072	Pabpc2	99	69.876
MGP_CBAJ_G0022842	Pabpc6	59	34.091	MGP_CBAJ_G0035052	Rbms3	77	33.708
MGP_CBAJ_G0022842	Pabpc6	60	32.468	MGP_CBAJ_G0028241	Elavl4	88	32.468
MGP_CBAJ_G0022842	Pabpc6	56	34.014	MGP_CBAJ_G0032753	Tial1	94	31.783
MGP_CBAJ_G0022842	Pabpc6	64	39.062	MGP_CBAJ_G0034556	Celf6	77	39.062
MGP_CBAJ_G0022842	Pabpc6	51	34.211	MGP_CBAJ_G0025044	Celf2	57	34.211
MGP_CBAJ_G0022842	Pabpc6	57	34.667	MGP_CBAJ_G0029663	Rbm19	70	34.667
MGP_CBAJ_G0022842	Pabpc6	53	35.526	MGP_CBAJ_G0025836	Celf1	52	35.526
MGP_CBAJ_G0022842	Pabpc6	59	58.470	MGP_CBAJ_G0035698	Pabpc5	95	58.445
MGP_CBAJ_G0022842	Pabpc6	72	36.585	MGP_CBAJ_G0027235	Celf3	80	37.500
MGP_CBAJ_G0022842	Pabpc6	61	36.145	MGP_CBAJ_G0034128	Elavl3	92	36.145
MGP_CBAJ_G0022842	Pabpc6	91	71.154	MGP_CBAJ_G0026733	-	99	71.154
MGP_CBAJ_G0022842	Pabpc6	61	88.315	MGP_CBAJ_G0021507	-	99	76.724
MGP_CBAJ_G0022842	Pabpc6	62	36.842	MGP_CBAJ_G0023910	Celf4	62	36.842
MGP_CBAJ_G0022842	Pabpc6	60	37.349	MGP_CBAJ_G0028108	Elavl2	90	37.349
MGP_CBAJ_G0022842	Pabpc6	97	56.625	MGP_CBAJ_G0026528	Pabpc1l	99	56.467
MGP_CBAJ_G0022842	Pabpc6	58	36.905	MGP_CBAJ_G0030638	Tia1	96	36.905