EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0023338 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 11710 bases
Position: chr17:38250597-38262306
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0047008	ResIII	PF04851.15	1.5e-07	1	1
MGP_CBAJ_P0047007	ResIII	PF04851.15	2.3e-07	1	1
MGP_CBAJ_P0047010	ResIII	PF04851.15	2.3e-07	1	1
MGP_CBAJ_P0047012	ResIII	PF04851.15	2.3e-07	1	1
MGP_CBAJ_P0047008	DEAD	PF00270.29	8e-39	1	1
MGP_CBAJ_P0047007	DEAD	PF00270.29	1.2e-38	1	1
MGP_CBAJ_P0047010	DEAD	PF00270.29	1.2e-38	1	1
MGP_CBAJ_P0047012	DEAD	PF00270.29	1.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0047008	-	1170	-	MGP_CBAJ_P0047008	324 (aa)	-	-
MGP_CBAJ_T0047009	-	1710	-	-	- (aa)	-	-
MGP_CBAJ_T0047012	-	1766	-	MGP_CBAJ_P0047012	428 (aa)	-	-
MGP_CBAJ_T0047011	-	740	-	-	- (aa)	-	-
MGP_CBAJ_T0047010	-	2845	-	MGP_CBAJ_P0047010	428 (aa)	-	-
MGP_CBAJ_T0047007	-	1735	-	MGP_CBAJ_P0047007	428 (aa)	-	Q9Z1N5

Gene Model

Click here to download MGP_CBAJ_G0023338's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0023338's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0023338	Ddx39b	88	34.037	MGP_CBAJ_G0031075	Ddx47	90	31.926
MGP_CBAJ_G0023338	Ddx39b	85	40.230	MGP_CBAJ_G0019198	Eif4a3	88	38.356
MGP_CBAJ_G0023338	Ddx39b	82	36.441	MGP_CBAJ_G0018272	Eif4a1	90	36.482
MGP_CBAJ_G0023338	Ddx39b	86	32.891	MGP_CBAJ_G0033366	Ddx49	97	33.046
MGP_CBAJ_G0023338	Ddx39b	63	30.804	MGP_CBAJ_G0016656	D1Pas1	57	30.105
MGP_CBAJ_G0023338	Ddx39b	91	30.896	MGP_CBAJ_G0033790	Ddx19a	83	30.896
MGP_CBAJ_G0023338	Ddx39b	84	32.970	MGP_CBAJ_G0026601	Ddx27	54	31.655
MGP_CBAJ_G0023338	Ddx39b	63	30.804	MGP_CBAJ_G0035227	Ddx3x	56	30.105
MGP_CBAJ_G0023338	Ddx39b	53	38.835	MGP_CBAJ_G0033791	Ddx19b	68	38.835
MGP_CBAJ_G0023338	Ddx39b	100	90.888	MGP_CBAJ_G0033503	Ddx39	100	90.888
MGP_CBAJ_G0023338	Ddx39b	84	31.903	MGP_CBAJ_G0034191	Ddx25	82	32.020
MGP_CBAJ_G0023338	Ddx39b	61	41.206	MGP_CBAJ_G0022380	Eif4a2	64	40.833