EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0024072 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc2
Alias: Pabp|Pabp+|Pabp2
Full Name: poly(A) binding protein%2C cytoplasmic 2
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 2586 bases
Position: chr18:40837721-40840306
Accession: 1349723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0049163	PABP	PF00658.18	1.8e-21	1	1
MGP_CBAJ_P0049163	RRM_5	PF13893.6	8.4e-10	1	2
MGP_CBAJ_P0049163	RRM_5	PF13893.6	8.4e-10	2	2
MGP_CBAJ_P0049163	RRM_1	PF00076.22	2.1e-86	1	4
MGP_CBAJ_P0049163	RRM_1	PF00076.22	2.1e-86	2	4
MGP_CBAJ_P0049163	RRM_1	PF00076.22	2.1e-86	3	4
MGP_CBAJ_P0049163	RRM_1	PF00076.22	2.1e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0049163	-	2586	-	MGP_CBAJ_P0049163	628 (aa)	-	Q62029

Gene Model

Click here to download MGP_CBAJ_G0024072's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0024072's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0024072	Pabpc2	61	34.940	MGP_CBAJ_G0034128	Elavl3	90	34.940
MGP_CBAJ_G0024072	Pabpc2	50	35.036	MGP_CBAJ_G0032753	Tial1	92	32.500
MGP_CBAJ_G0024072	Pabpc2	92	73.077	MGP_CBAJ_G0026733	-	99	71.698
MGP_CBAJ_G0024072	Pabpc2	99	69.876	MGP_CBAJ_G0022842	Pabpc6	99	70.186
MGP_CBAJ_G0024072	Pabpc2	98	56.938	MGP_CBAJ_G0026528	Pabpc1l	99	56.938
MGP_CBAJ_G0024072	Pabpc2	62	60.955	MGP_CBAJ_G0035698	Pabpc5	96	61.111
MGP_CBAJ_G0024072	Pabpc2	61	87.709	MGP_CBAJ_G0021507	-	99	76.724
MGP_CBAJ_G0024072	Pabpc2	99	66.719	MGP_CBAJ_G0028401	Pabpc4	100	89.320
MGP_CBAJ_G0024072	Pabpc2	57	35.443	MGP_CBAJ_G0030638	Tia1	95	33.835
MGP_CBAJ_G0024072	Pabpc2	61	64.167	MGP_CBAJ_G0026882	Pabpc4l	95	68.098
MGP_CBAJ_G0024072	Pabpc2	59	34.667	MGP_CBAJ_G0029663	Rbm19	70	34.667
MGP_CBAJ_G0024072	Pabpc2	59	34.940	MGP_CBAJ_G0028241	Elavl4	88	34.940
MGP_CBAJ_G0024072	Pabpc2	59	36.145	MGP_CBAJ_G0028108	Elavl2	89	36.145