EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0025476 (Gene tree)
Gene ID: -
Gene Symbol: Rbms1
Alias: 2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|Mssp|Mssp1|YC1
Full Name: RNA binding motif%2C single stranded interacting protein 1
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 236262 bases
Position: chr2:64484153-64720414
Accession: 1861774
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0054582	RRM_1	PF00076.22	1.4e-32	1	2
MGP_CBAJ_P0054582	RRM_1	PF00076.22	1.4e-32	2	2
MGP_CBAJ_P0054580	RRM_1	PF00076.22	1.7e-32	1	2
MGP_CBAJ_P0054580	RRM_1	PF00076.22	1.7e-32	2	2
MGP_CBAJ_P0054581	RRM_1	PF00076.22	1.8e-32	1	2
MGP_CBAJ_P0054581	RRM_1	PF00076.22	1.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0054588	-	123	-	-	- (aa)	-	-
MGP_CBAJ_T0054585	-	224	-	-	- (aa)	-	-
MGP_CBAJ_T0054584	-	757	-	-	- (aa)	-	-
MGP_CBAJ_T0054587	-	202	-	-	- (aa)	-	-
MGP_CBAJ_T0054586	-	217	-	-	- (aa)	-	-
MGP_CBAJ_T0054581	-	2543	-	MGP_CBAJ_P0054581	417 (aa)	-	-
MGP_CBAJ_T0054580	-	4436	XM_006499940	MGP_CBAJ_P0054580	403 (aa)	XP_006500003	Q91W59
MGP_CBAJ_T0054583	-	644	-	-	- (aa)	-	-
MGP_CBAJ_T0054582	-	1806	-	MGP_CBAJ_P0054582	386 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0025476's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0025476's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0025476	Rbms1	51	37.209	MGP_CBAJ_G0028108	Elavl2	60	41.558
MGP_CBAJ_G0025476	Rbms1	99	66.753	MGP_CBAJ_G0017581	Rbms2	86	71.758
MGP_CBAJ_G0025476	Rbms1	53	32.773	MGP_CBAJ_G0028241	Elavl4	70	36.458
MGP_CBAJ_G0025476	Rbms1	51	33.645	MGP_CBAJ_G0034128	Elavl3	50	36.207
MGP_CBAJ_G0025476	Rbms1	96	71.538	MGP_CBAJ_G0035052	Rbms3	99	80.841