EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0026420 (Gene tree)
Gene ID: -
Gene Symbol: Raly
Alias: AI663842|Merc
Full Name: hnRNP-associated with lethal yellow
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 86487 bases
Position: chr2:170208544-170295030
Accession: 97850
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0058134	RRM_1	PF00076.22	1.8e-12	1	1
MGP_CBAJ_P0058132	RRM_1	PF00076.22	3.8e-12	1	1
MGP_CBAJ_P0058131	RRM_1	PF00076.22	7.2e-12	1	1
MGP_CBAJ_P0058136	RRM_1	PF00076.22	7.2e-12	1	1
MGP_CBAJ_P0058137	RRM_1	PF00076.22	7.5e-12	1	1
MGP_CBAJ_P0058133	RRM_1	PF00076.22	8e-12	1	1
MGP_CBAJ_P0058135	RRM_1	PF00076.22	8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0058141	-	337	-	-	- (aa)	-	-
MGP_CBAJ_T0058138	-	1604	-	-	- (aa)	-	-
MGP_CBAJ_T0058139	-	404	-	-	- (aa)	-	-
MGP_CBAJ_T0058134	-	546	-	MGP_CBAJ_P0058134	141 (aa)	-	-
MGP_CBAJ_T0058135	-	1802	-	MGP_CBAJ_P0058135	312 (aa)	-	-
MGP_CBAJ_T0058136	-	1747	-	MGP_CBAJ_P0058136	296 (aa)	-	-
MGP_CBAJ_T0058137	-	1100	-	MGP_CBAJ_P0058137	298 (aa)	-	-
MGP_CBAJ_T0058131	-	1709	XM_006499013	MGP_CBAJ_P0058131	296 (aa)	XP_006499076	Q64012
MGP_CBAJ_T0058132	-	851	-	MGP_CBAJ_P0058132	211 (aa)	-	-
MGP_CBAJ_T0058133	-	1759	-	MGP_CBAJ_P0058133	312 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0026420's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0026420's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0026420	Raly	51	32.500	MGP_CBAJ_G0035395	Rbmx	77	32.500
MGP_CBAJ_G0026420	Raly	54	35.526	MGP_CBAJ_G0026507	Srsf6	56	35.526
MGP_CBAJ_G0026420	Raly	52	32.099	MGP_CBAJ_G0033470	-	66	30.693
MGP_CBAJ_G0026420	Raly	72	74.757	MGP_CBAJ_G0020998	Hnrnpc	72	52.814