EuRBPDB

Description

Ensembl ID: MGP_CBAJ_G0026455 (Gene tree)
Gene ID: -
Gene Symbol: Rbm39
Alias: 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|Caper|Caper alpha|R75070|Rnpc2|caper
Full Name: RNA binding motif protein 39
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 39918 bases
Position: chr2:171763890-171803807
Accession: 2157953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0058348	RRM_1	PF00076.22	1.2e-41	1	2
MGP_CBAJ_P0058348	RRM_1	PF00076.22	1.2e-41	2	2
MGP_CBAJ_P0058349	RRM_1	PF00076.22	1.7e-41	1	2
MGP_CBAJ_P0058349	RRM_1	PF00076.22	1.7e-41	2	2
MGP_CBAJ_P0058351	RRM_1	PF00076.22	1.7e-41	1	2
MGP_CBAJ_P0058351	RRM_1	PF00076.22	1.7e-41	2	2
MGP_CBAJ_P0058354	RRM_1	PF00076.22	2.2e-22	1	1
MGP_CBAJ_P0058355	RRM_1	PF00076.22	9.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0058372	-	715	-	-	- (aa)	-	-
MGP_CBAJ_T0058370	-	699	-	MGP_CBAJ_P0058370	40 (aa)	-	-
MGP_CBAJ_T0058371	-	1008	-	-	- (aa)	-	-
MGP_CBAJ_T0058354	-	931	-	MGP_CBAJ_P0058354	310 (aa)	-	-
MGP_CBAJ_T0058355	-	1090	-	MGP_CBAJ_P0058355	273 (aa)	-	-
MGP_CBAJ_T0058356	-	695	-	-	- (aa)	-	-
MGP_CBAJ_T0058357	-	546	-	-	- (aa)	-	-
MGP_CBAJ_T0058350	-	2744	-	MGP_CBAJ_P0058350	415 (aa)	-	-
MGP_CBAJ_T0058351	-	2711	-	MGP_CBAJ_P0058351	524 (aa)	-	-
MGP_CBAJ_T0058352	-	2127	-	MGP_CBAJ_P0058352	47 (aa)	-	-
MGP_CBAJ_T0058353	-	2120	-	MGP_CBAJ_P0058353	40 (aa)	-	-
MGP_CBAJ_T0058358	-	1453	-	-	- (aa)	-	-
MGP_CBAJ_T0058359	-	754	-	MGP_CBAJ_P0058359	156 (aa)	-	-
MGP_CBAJ_T0058369	-	672	-	-	- (aa)	-	-
MGP_CBAJ_T0058368	-	667	-	MGP_CBAJ_P0058368	38 (aa)	-	-
MGP_CBAJ_T0058365	-	710	-	-	- (aa)	-	-
MGP_CBAJ_T0058364	-	593	-	MGP_CBAJ_P0058364	39 (aa)	-	-
MGP_CBAJ_T0058367	-	743	-	MGP_CBAJ_P0058367	40 (aa)	-	-
MGP_CBAJ_T0058366	-	585	-	MGP_CBAJ_P0058366	62 (aa)	-	-
MGP_CBAJ_T0058361	-	714	-	-	- (aa)	-	-
MGP_CBAJ_T0058360	-	497	-	-	- (aa)	-	-
MGP_CBAJ_T0058363	-	707	-	MGP_CBAJ_P0058363	40 (aa)	-	-
MGP_CBAJ_T0058362	-	685	-	-	- (aa)	-	-
MGP_CBAJ_T0058349	-	2580	-	MGP_CBAJ_P0058349	524 (aa)	-	-
MGP_CBAJ_T0058348	-	2810	XM_006498832	MGP_CBAJ_P0058348	530 (aa)	XP_006498895	Q8VH51

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0026455	Rbm39	52	34.483	MGP_CBAJ_G0017227	Dazap1	94	34.483