EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0026528 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 33378 bases
Position: chr2:180611321-180644698
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0058718	PABP	PF00658.18	1.8e-23	1	1
MGP_CBAJ_P0058718	RRM_5	PF13893.6	3.2e-17	1	3
MGP_CBAJ_P0058718	RRM_5	PF13893.6	3.2e-17	2	3
MGP_CBAJ_P0058718	RRM_5	PF13893.6	3.2e-17	3	3
MGP_CBAJ_P0058718	RRM_1	PF00076.22	3.5e-90	1	4
MGP_CBAJ_P0058718	RRM_1	PF00076.22	3.5e-90	2	4
MGP_CBAJ_P0058718	RRM_1	PF00076.22	3.5e-90	3	4
MGP_CBAJ_P0058718	RRM_1	PF00076.22	3.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0058721	-	750	-	-	- (aa)	-	-
MGP_CBAJ_T0058722	-	328	-	-	- (aa)	-	-
MGP_CBAJ_T0058718	-	2354	XM_006499825	MGP_CBAJ_P0058718	607 (aa)	XP_006499888	A2A5N3
MGP_CBAJ_T0058719	-	617	-	-	- (aa)	-	-
MGP_CBAJ_T0058720	-	438	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0026528's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0026528's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0026528	Pabpc1l	64	57.022	MGP_CBAJ_G0035698	Pabpc5	96	56.944
MGP_CBAJ_G0026528	Pabpc1l	56	30.864	MGP_CBAJ_G0020336	Hnrnpa0	50	31.613
MGP_CBAJ_G0026528	Pabpc1l	59	38.095	MGP_CBAJ_G0030638	Tia1	87	38.095
MGP_CBAJ_G0026528	Pabpc1l	97	61.413	MGP_CBAJ_G0026733	-	95	61.413
MGP_CBAJ_G0026528	Pabpc1l	61	75.931	MGP_CBAJ_G0021507	-	80	60.638
MGP_CBAJ_G0026528	Pabpc1l	62	33.735	MGP_CBAJ_G0028241	Elavl4	89	33.735
MGP_CBAJ_G0026528	Pabpc1l	60	35.484	MGP_CBAJ_G0029663	Rbm19	72	36.066
MGP_CBAJ_G0026528	Pabpc1l	53	39.759	MGP_CBAJ_G0017221	Cirbp	91	39.759
MGP_CBAJ_G0026528	Pabpc1l	99	56.938	MGP_CBAJ_G0024072	Pabpc2	98	56.938
MGP_CBAJ_G0026528	Pabpc1l	59	60.736	MGP_CBAJ_G0026882	Pabpc4l	95	60.736
MGP_CBAJ_G0026528	Pabpc1l	64	34.940	MGP_CBAJ_G0028108	Elavl2	92	34.940
MGP_CBAJ_G0026528	Pabpc1l	53	34.884	MGP_CBAJ_G0025044	Celf2	57	34.884
MGP_CBAJ_G0026528	Pabpc1l	57	34.118	MGP_CBAJ_G0027235	Celf3	67	32.857
MGP_CBAJ_G0026528	Pabpc1l	99	56.467	MGP_CBAJ_G0022842	Pabpc6	97	56.625
MGP_CBAJ_G0026528	Pabpc1l	59	30.818	MGP_CBAJ_G0035052	Rbms3	77	30.818
MGP_CBAJ_G0026528	Pabpc1l	63	38.889	MGP_CBAJ_G0034128	Elavl3	59	30.488
MGP_CBAJ_G0026528	Pabpc1l	99	60.194	MGP_CBAJ_G0028401	Pabpc4	100	78.641