EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0026647 (Gene tree)
Gene ID: -
Gene Symbol: Rbm38
Alias: Rnpc1|Seb4|Seb4l
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 12827 bases
Position: chr2:191322910-191335736
Accession: 1889294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0059185	RRM_1	PF00076.22	1.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0059183	-	936	XM_006499923	MGP_CBAJ_P0059183	78 (aa)	XP_006499986	Q62176
MGP_CBAJ_T0059186	-	620	-	MGP_CBAJ_P0059186	107 (aa)	-	-
MGP_CBAJ_T0059187	-	440	-	MGP_CBAJ_P0059187	125 (aa)	-	-
MGP_CBAJ_T0059184	-	2280	-	-	- (aa)	-	-
MGP_CBAJ_T0059185	-	714	-	MGP_CBAJ_P0059185	237 (aa)	-	-
MGP_CBAJ_T0059188	-	1527	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0026647's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0026647's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0026647	Rbm38	70	38.095	MGP_CBAJ_G0018650	Msi2	80	34.074
MGP_CBAJ_G0026647	Rbm38	63	91.837	MGP_CBAJ_G0020222	Rbm24	100	68.067
MGP_CBAJ_G0026647	Rbm38	51	36.364	MGP_CBAJ_G0029449	Hnrnpd	51	36.364
MGP_CBAJ_G0026647	Rbm38	66	46.809	MGP_CBAJ_G0029632	Msi1	61	51.064
MGP_CBAJ_G0026647	Rbm38	77	35.484	MGP_CBAJ_G0017227	Dazap1	86	35.802
MGP_CBAJ_G0026647	Rbm38	74	38.043	MGP_CBAJ_G0017221	Cirbp	78	40.476