EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0026882 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 6013 bases
Position: chr3:47872082-47878094
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0060327	RRM_5	PF13893.6	1.6e-13	1	3
MGP_CBAJ_P0060327	RRM_5	PF13893.6	1.6e-13	2	3
MGP_CBAJ_P0060327	RRM_5	PF13893.6	1.6e-13	3	3
MGP_CBAJ_P0060328	RRM_5	PF13893.6	1.6e-13	1	3
MGP_CBAJ_P0060328	RRM_5	PF13893.6	1.6e-13	2	3
MGP_CBAJ_P0060328	RRM_5	PF13893.6	1.6e-13	3	3
MGP_CBAJ_P0060327	RRM_1	PF00076.22	4.7e-83	1	4
MGP_CBAJ_P0060327	RRM_1	PF00076.22	4.7e-83	2	4
MGP_CBAJ_P0060327	RRM_1	PF00076.22	4.7e-83	3	4
MGP_CBAJ_P0060327	RRM_1	PF00076.22	4.7e-83	4	4
MGP_CBAJ_P0060328	RRM_1	PF00076.22	4.7e-83	1	4
MGP_CBAJ_P0060328	RRM_1	PF00076.22	4.7e-83	2	4
MGP_CBAJ_P0060328	RRM_1	PF00076.22	4.7e-83	3	4
MGP_CBAJ_P0060328	RRM_1	PF00076.22	4.7e-83	4	4
MGP_CBAJ_P0060329	RRM_1	PF00076.22	1.8e-40	1	2
MGP_CBAJ_P0060329	RRM_1	PF00076.22	1.8e-40	2	2
MGP_CBAJ_P0060330	RRM_1	PF00076.22	1.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0060327	-	5242	XM_006500774	MGP_CBAJ_P0060327	370 (aa)	XP_006500837	A0A0A6YWT2
MGP_CBAJ_T0060330	-	467	-	MGP_CBAJ_P0060330	50 (aa)	-	-
MGP_CBAJ_T0060328	-	5208	-	MGP_CBAJ_P0060328	370 (aa)	-	-
MGP_CBAJ_T0060329	-	723	-	MGP_CBAJ_P0060329	172 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0026882's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0026882's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0026882	Pabpc4l	83	34.286	MGP_CBAJ_G0035193	Rbm3	90	35.385
MGP_CBAJ_G0026882	Pabpc4l	94	33.333	MGP_CBAJ_G0032753	Tial1	99	31.618
MGP_CBAJ_G0026882	Pabpc4l	97	57.865	MGP_CBAJ_G0035698	Pabpc5	96	57.967
MGP_CBAJ_G0026882	Pabpc4l	89	31.875	MGP_CBAJ_G0028530	Trnau1ap	88	34.211
MGP_CBAJ_G0026882	Pabpc4l	65	34.211	MGP_CBAJ_G0025836	Celf1	57	37.879
MGP_CBAJ_G0026882	Pabpc4l	96	30.065	MGP_CBAJ_G0028241	Elavl4	70	35.484
MGP_CBAJ_G0026882	Pabpc4l	95	30.539	MGP_CBAJ_G0030638	Tia1	95	30.000
MGP_CBAJ_G0026882	Pabpc4l	98	70.552	MGP_CBAJ_G0028401	Pabpc4	100	69.000
MGP_CBAJ_G0026882	Pabpc4l	94	30.464	MGP_CBAJ_G0033001	Elavl1	91	30.464
MGP_CBAJ_G0026882	Pabpc4l	97	69.277	MGP_CBAJ_G0021507	-	58	69.277
MGP_CBAJ_G0026882	Pabpc4l	96	36.145	MGP_CBAJ_G0034128	Elavl3	90	36.145
MGP_CBAJ_G0026882	Pabpc4l	98	64.497	MGP_CBAJ_G0022842	Pabpc6	58	64.497
MGP_CBAJ_G0026882	Pabpc4l	95	60.736	MGP_CBAJ_G0026528	Pabpc1l	59	60.736
MGP_CBAJ_G0026882	Pabpc4l	95	68.098	MGP_CBAJ_G0024072	Pabpc2	61	64.167
MGP_CBAJ_G0026882	Pabpc4l	96	34.940	MGP_CBAJ_G0028108	Elavl2	89	34.940