EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0027320 (Gene tree)
Gene ID: -
Gene Symbol: Chd1l
Alias: 4432404A22Rik|Alc1|Snf2p
Full Name: chromodomain helicase DNA binding protein 1-like
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 53526 bases
Position: chr3:105814891-105868416
Accession: 1915308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0062265	ResIII	PF04851.15	1.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0062265	-	3008	XM_017319700	MGP_CBAJ_P0062265	900 (aa)	XP_017175189	Q9CXF7
MGP_CBAJ_T0062267	-	2941	-	-	- (aa)	-	-
MGP_CBAJ_T0062266	-	501	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0027320's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0027320's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0027320	Chd1l	51	35.135	MGP_CBAJ_G0030494	Smarcad1	50	35.135
MGP_CBAJ_G0027320	Chd1l	50	32.657	MGP_CBAJ_G0020378	Ercc6l2	81	30.021
MGP_CBAJ_G0027320	Chd1l	50	30.584	MGP_CBAJ_G0028281	Rad54l	66	30.785
MGP_CBAJ_G0027320	Chd1l	62	43.419	MGP_CBAJ_G0035331	Smarca1	75	42.044
MGP_CBAJ_G0027320	Chd1l	64	40.541	MGP_CBAJ_G0033483	Smarca5	54	40.236
MGP_CBAJ_G0027320	Chd1l	54	39.054	MGP_CBAJ_G0024806	Hells	69	39.054
MGP_CBAJ_G0027320	Chd1l	50	30.724	MGP_CBAJ_G0027728	Rad54b	56	30.196