EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0027502 (Gene tree)
Gene ID: -
Gene Symbol: Ptbp2
Alias: Brptb|Nptb|Ptb2|brPTB|nPTB
Full Name: polypyrimidine tract binding protein 2
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 72461 bases
Position: chr3:130560632-130633092
Accession: 1860489
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0063052	RRM_5	PF13893.6	3.3e-53	1	3
MGP_CBAJ_P0063052	RRM_5	PF13893.6	3.3e-53	2	3
MGP_CBAJ_P0063052	RRM_5	PF13893.6	3.3e-53	3	3
MGP_CBAJ_P0063051	RRM_5	PF13893.6	4e-52	1	2
MGP_CBAJ_P0063051	RRM_5	PF13893.6	4e-52	2	2
MGP_CBAJ_P0063057	RRM_5	PF13893.6	3.4e-20	1	1
MGP_CBAJ_P0063051	RRM_1	PF00076.22	5.9e-33	1	3
MGP_CBAJ_P0063051	RRM_1	PF00076.22	5.9e-33	2	3
MGP_CBAJ_P0063051	RRM_1	PF00076.22	5.9e-33	3	3
MGP_CBAJ_P0063052	RRM_1	PF00076.22	2e-32	1	3
MGP_CBAJ_P0063052	RRM_1	PF00076.22	2e-32	2	3
MGP_CBAJ_P0063052	RRM_1	PF00076.22	2e-32	3	3
MGP_CBAJ_P0063059	RRM_1	PF00076.22	2.5e-10	1	1
MGP_CBAJ_P0063057	RRM_1	PF00076.22	0.00023	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0063060	-	654	-	-	- (aa)	-	-
MGP_CBAJ_T0063061	-	478	-	-	- (aa)	-	-
MGP_CBAJ_T0063055	-	937	-	-	- (aa)	-	-
MGP_CBAJ_T0063054	-	576	-	MGP_CBAJ_P0063054	33 (aa)	-	-
MGP_CBAJ_T0063057	-	465	-	MGP_CBAJ_P0063057	155 (aa)	-	-
MGP_CBAJ_T0063056	-	491	-	-	- (aa)	-	-
MGP_CBAJ_T0063051	-	3774	XM_006501731	MGP_CBAJ_P0063051	531 (aa)	XP_006501794	Q91Z31
MGP_CBAJ_T0063053	-	1598	-	MGP_CBAJ_P0063053	356 (aa)	-	-
MGP_CBAJ_T0063052	-	3365	-	MGP_CBAJ_P0063052	532 (aa)	-	-
MGP_CBAJ_T0063059	-	1742	-	MGP_CBAJ_P0063059	241 (aa)	-	-
MGP_CBAJ_T0063058	-	4047	-	-	- (aa)	-	-
MGP_CBAJ_T0063062	-	454	-	-	- (aa)	-	-
MGP_CBAJ_T0063063	-	389	-	MGP_CBAJ_P0063063	49 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0027502's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0027502's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0027502	Ptbp2	77	30.645	MGP_CBAJ_G0031632	Hnrnpl	77	30.645
MGP_CBAJ_G0027502	Ptbp2	100	72.903	MGP_CBAJ_G0017198	Ptbp1	100	73.048
MGP_CBAJ_G0027502	Ptbp2	99	30.357	MGP_CBAJ_G0023752	Hnrnpll	57	30.000
MGP_CBAJ_G0027502	Ptbp2	99	69.835	MGP_CBAJ_G0028002	Ptbp3	91	78.195