EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0027664 (Gene tree)
Gene ID: -
Gene Symbol: Fubp1
Alias: 9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4
Full Name: far upstream element (FUSE) binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 26311 bases
Position: chr3:166992371-167018681
Accession: 1196294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0063921	KH_1	PF00013.29	7.1e-70	1	4
MGP_CBAJ_P0063921	KH_1	PF00013.29	7.1e-70	2	4
MGP_CBAJ_P0063921	KH_1	PF00013.29	7.1e-70	3	4
MGP_CBAJ_P0063921	KH_1	PF00013.29	7.1e-70	4	4
MGP_CBAJ_P0063918	KH_1	PF00013.29	2.2e-69	1	4
MGP_CBAJ_P0063918	KH_1	PF00013.29	2.2e-69	2	4
MGP_CBAJ_P0063918	KH_1	PF00013.29	2.2e-69	3	4
MGP_CBAJ_P0063918	KH_1	PF00013.29	2.2e-69	4	4
MGP_CBAJ_P0063924	KH_1	PF00013.29	2.2e-69	1	4
MGP_CBAJ_P0063924	KH_1	PF00013.29	2.2e-69	2	4
MGP_CBAJ_P0063924	KH_1	PF00013.29	2.2e-69	3	4
MGP_CBAJ_P0063924	KH_1	PF00013.29	2.2e-69	4	4
MGP_CBAJ_P0063922	KH_1	PF00013.29	2.4e-69	1	4
MGP_CBAJ_P0063922	KH_1	PF00013.29	2.4e-69	2	4
MGP_CBAJ_P0063922	KH_1	PF00013.29	2.4e-69	3	4
MGP_CBAJ_P0063922	KH_1	PF00013.29	2.4e-69	4	4
MGP_CBAJ_P0063920	KH_1	PF00013.29	2.4e-69	1	4
MGP_CBAJ_P0063920	KH_1	PF00013.29	2.4e-69	2	4
MGP_CBAJ_P0063920	KH_1	PF00013.29	2.4e-69	3	4
MGP_CBAJ_P0063920	KH_1	PF00013.29	2.4e-69	4	4
MGP_CBAJ_P0063919	KH_1	PF00013.29	7.6e-38	1	2
MGP_CBAJ_P0063919	KH_1	PF00013.29	7.6e-38	2	2
MGP_CBAJ_P0063928	KH_1	PF00013.29	1.1e-16	1	1
MGP_CBAJ_P0063921	KH_2	PF07650.17	1.3e-22	1	2
MGP_CBAJ_P0063921	KH_2	PF07650.17	1.3e-22	2	2
MGP_CBAJ_P0063924	KH_2	PF07650.17	3.3e-22	1	2
MGP_CBAJ_P0063924	KH_2	PF07650.17	3.3e-22	2	2
MGP_CBAJ_P0063922	KH_2	PF07650.17	3.5e-22	1	2
MGP_CBAJ_P0063922	KH_2	PF07650.17	3.5e-22	2	2
MGP_CBAJ_P0063920	KH_2	PF07650.17	3.6e-22	1	2
MGP_CBAJ_P0063920	KH_2	PF07650.17	3.6e-22	2	2
MGP_CBAJ_P0063918	KH_2	PF07650.17	3.6e-22	1	2
MGP_CBAJ_P0063918	KH_2	PF07650.17	3.6e-22	2	2
MGP_CBAJ_P0063919	KH_2	PF07650.17	3.8e-10	1	1
MGP_CBAJ_P0063928	KH_2	PF07650.17	5.2e-06	1	1
MGP_CBAJ_P0063932	DUF1897	PF09005.10	1.7e-12	1	2
MGP_CBAJ_P0063932	DUF1897	PF09005.10	1.7e-12	2	2
MGP_CBAJ_P0063930	DUF1897	PF09005.10	2.1e-12	1	2
MGP_CBAJ_P0063930	DUF1897	PF09005.10	2.1e-12	2	2
MGP_CBAJ_P0063918	DUF1897	PF09005.10	2.4e-11	1	2
MGP_CBAJ_P0063918	DUF1897	PF09005.10	2.4e-11	2	2
MGP_CBAJ_P0063924	DUF1897	PF09005.10	2.4e-11	1	2
MGP_CBAJ_P0063924	DUF1897	PF09005.10	2.4e-11	2	2
MGP_CBAJ_P0063922	DUF1897	PF09005.10	2.5e-11	1	2
MGP_CBAJ_P0063922	DUF1897	PF09005.10	2.5e-11	2	2
MGP_CBAJ_P0063920	DUF1897	PF09005.10	2.6e-11	1	2
MGP_CBAJ_P0063920	DUF1897	PF09005.10	2.6e-11	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0063925	-	4867	-	MGP_CBAJ_P0063925	700 (aa)	-	-
MGP_CBAJ_T0063924	-	2374	-	MGP_CBAJ_P0063924	643 (aa)	-	-
MGP_CBAJ_T0063927	-	435	-	-	- (aa)	-	-
MGP_CBAJ_T0063926	-	4525	-	MGP_CBAJ_P0063926	642 (aa)	-	-
MGP_CBAJ_T0063921	-	3194	-	MGP_CBAJ_P0063921	523 (aa)	-	-
MGP_CBAJ_T0063919	-	1040	-	MGP_CBAJ_P0063919	306 (aa)	-	-
MGP_CBAJ_T0063923	-	2085	-	MGP_CBAJ_P0063923	69 (aa)	-	-
MGP_CBAJ_T0063922	-	2526	-	MGP_CBAJ_P0063922	651 (aa)	-	-
MGP_CBAJ_T0063934	-	424	-	-	- (aa)	-	-
MGP_CBAJ_T0063931	-	800	-	MGP_CBAJ_P0063931	173 (aa)	-	-
MGP_CBAJ_T0063929	-	512	-	-	- (aa)	-	-
MGP_CBAJ_T0063928	-	585	-	MGP_CBAJ_P0063928	149 (aa)	-	-
MGP_CBAJ_T0063935	-	4002	-	-	- (aa)	-	-
MGP_CBAJ_T0063918	-	6547	XM_006501660	MGP_CBAJ_P0063918	642 (aa)	XP_006501723	Q91WJ8
MGP_CBAJ_T0063930	-	796	-	MGP_CBAJ_P0063930	141 (aa)	-	-
MGP_CBAJ_T0063936	-	665	-	-	- (aa)	-	-
MGP_CBAJ_T0063933	-	5101	-	-	- (aa)	-	-
MGP_CBAJ_T0063932	-	830	-	MGP_CBAJ_P0063932	156 (aa)	-	-
MGP_CBAJ_T0063920	-	2552	-	MGP_CBAJ_P0063920	654 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0027664's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0027664's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0027664	Fubp1	94	59.208	MGP_CBAJ_G0025298	Fubp3	96	64.324
MGP_CBAJ_G0027664	Fubp1	96	64.410	MGP_CBAJ_G0023648	Khsrp	70	67.654
MGP_CBAJ_G0027664	Fubp1	50	36.364	MGP_CBAJ_G0019432	Nova1	57	36.364
MGP_CBAJ_G0027664	Fubp1	69	30.168	MGP_CBAJ_G0031413	-	53	36.765
MGP_CBAJ_G0027664	Fubp1	61	36.765	MGP_CBAJ_G0031414	-	54	36.765
MGP_CBAJ_G0027664	Fubp1	72	34.524	MGP_CBAJ_G0034883	Pcbp4	76	33.684
MGP_CBAJ_G0027664	Fubp1	72	33.019	MGP_CBAJ_G0017123	Pcbp3	66	31.250