EuRBPDB

Description

Ensembl ID: MGP_CBAJ_G0027715 (Gene tree)
Gene ID: -
Gene Symbol: Chd7
Alias: A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis
Full Name: chromodomain helicase DNA binding protein 7
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 187192 bases
Position: chr4:5650822-5838013
Accession: 2444748
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0064229	ResIII	PF04851.15	4.5e-06	1	1
MGP_CBAJ_P0064230	ResIII	PF04851.15	4.5e-06	1	1
MGP_CBAJ_P0064229	BRK	PF07533.16	4.7e-37	1	2
MGP_CBAJ_P0064229	BRK	PF07533.16	4.7e-37	2	2
MGP_CBAJ_P0064230	BRK	PF07533.16	4.7e-37	1	2
MGP_CBAJ_P0064230	BRK	PF07533.16	4.7e-37	2	2
MGP_CBAJ_P0064232	BRK	PF07533.16	1.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0064227	-	4953	-	-	- (aa)	-	-
MGP_CBAJ_T0064230	-	10216	-	MGP_CBAJ_P0064230	2986 (aa)	-	-
MGP_CBAJ_T0064231	-	458	-	MGP_CBAJ_P0064231	19 (aa)	-	-
MGP_CBAJ_T0064232	-	3463	-	MGP_CBAJ_P0064232	941 (aa)	-	-
MGP_CBAJ_T0064233	-	9959	-	MGP_CBAJ_P0064233	2985 (aa)	-	-
MGP_CBAJ_T0064234	-	741	-	-	- (aa)	-	-
MGP_CBAJ_T0064229	-	9445	-	MGP_CBAJ_P0064229	2986 (aa)	-	-
MGP_CBAJ_T0064228	-	2381	-	MGP_CBAJ_P0064228	631 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0027715	Chd7	94	54.334	MGP_CBAJ_G0033588	Chd9	83	69.649
MGP_CBAJ_G0027715	Chd7	72	64.905	MGP_CBAJ_G0026504	Chd6	84	72.837