EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0028002 (Gene tree)
Gene ID: -
Gene Symbol: Ptbp3
Alias: 5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1
Full Name: polypyrimidine tract binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 85721 bases
Position: chr4:62466305-62552025
Accession: 1923334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0065491	RRM_5	PF13893.6	1.1e-61	1	3
MGP_CBAJ_P0065491	RRM_5	PF13893.6	1.1e-61	2	3
MGP_CBAJ_P0065491	RRM_5	PF13893.6	1.1e-61	3	3
MGP_CBAJ_P0065490	RRM_5	PF13893.6	1.2e-61	1	3
MGP_CBAJ_P0065490	RRM_5	PF13893.6	1.2e-61	2	3
MGP_CBAJ_P0065490	RRM_5	PF13893.6	1.2e-61	3	3
MGP_CBAJ_P0065493	RRM_5	PF13893.6	1.3e-47	1	1
MGP_CBAJ_P0065496	RRM_5	PF13893.6	7.1e-06	1	1
MGP_CBAJ_P0065491	RRM_1	PF00076.22	2.1e-31	1	3
MGP_CBAJ_P0065491	RRM_1	PF00076.22	2.1e-31	2	3
MGP_CBAJ_P0065491	RRM_1	PF00076.22	2.1e-31	3	3
MGP_CBAJ_P0065490	RRM_1	PF00076.22	2.2e-31	1	3
MGP_CBAJ_P0065490	RRM_1	PF00076.22	2.2e-31	2	3
MGP_CBAJ_P0065490	RRM_1	PF00076.22	2.2e-31	3	3
MGP_CBAJ_P0065496	RRM_1	PF00076.22	2.8e-11	1	1
MGP_CBAJ_P0065493	RRM_1	PF00076.22	3.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0065498	-	606	-	MGP_CBAJ_P0065498	104 (aa)	-	-
MGP_CBAJ_T0065497	-	447	-	-	- (aa)	-	-
MGP_CBAJ_T0065496	-	550	-	MGP_CBAJ_P0065496	146 (aa)	-	-
MGP_CBAJ_T0065495	-	558	-	MGP_CBAJ_P0065495	41 (aa)	-	-
MGP_CBAJ_T0065494	-	1286	-	MGP_CBAJ_P0065494	45 (aa)	-	-
MGP_CBAJ_T0065493	-	566	-	MGP_CBAJ_P0065493	188 (aa)	-	-
MGP_CBAJ_T0065492	-	669	-	-	- (aa)	-	-
MGP_CBAJ_T0065491	-	3409	-	MGP_CBAJ_P0065491	551 (aa)	-	-
MGP_CBAJ_T0065490	-	6677	XM_006537851	MGP_CBAJ_P0065490	554 (aa)	XP_006537914	Q8BHD7

Gene Model

Click here to download MGP_CBAJ_G0028002's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0028002's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0028002	Ptbp3	91	78.195	MGP_CBAJ_G0027502	Ptbp2	99	69.835
MGP_CBAJ_G0028002	Ptbp3	83	35.537	MGP_CBAJ_G0031632	Hnrnpl	55	36.207
MGP_CBAJ_G0028002	Ptbp3	100	77.379	MGP_CBAJ_G0017198	Ptbp1	100	78.136