EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0028241 (Gene tree)
Gene ID: -
Gene Symbol: Elavl4
Alias: Elav|Hud|PNEM
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 4 (Hu antigen D)
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 152557 bases
Position: chr4:118772841-118925397
Accession: 107427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0066543	RRM_5	PF13893.6	2.8e-13	1	2
MGP_CBAJ_P0066543	RRM_5	PF13893.6	2.8e-13	2	2
MGP_CBAJ_P0066539	RRM_5	PF13893.6	3.1e-13	1	2
MGP_CBAJ_P0066539	RRM_5	PF13893.6	3.1e-13	2	2
MGP_CBAJ_P0066540	RRM_5	PF13893.6	3.2e-13	1	2
MGP_CBAJ_P0066540	RRM_5	PF13893.6	3.2e-13	2	2
MGP_CBAJ_P0066545	RRM_5	PF13893.6	3.4e-13	1	2
MGP_CBAJ_P0066545	RRM_5	PF13893.6	3.4e-13	2	2
MGP_CBAJ_P0066542	RRM_5	PF13893.6	3.6e-13	1	2
MGP_CBAJ_P0066542	RRM_5	PF13893.6	3.6e-13	2	2
MGP_CBAJ_P0066541	RRM_5	PF13893.6	3.9e-13	1	2
MGP_CBAJ_P0066541	RRM_5	PF13893.6	3.9e-13	2	2
MGP_CBAJ_P0066544	RRM_5	PF13893.6	3.9e-13	1	2
MGP_CBAJ_P0066544	RRM_5	PF13893.6	3.9e-13	2	2
MGP_CBAJ_P0066543	RRM_1	PF00076.22	2.1e-65	1	3
MGP_CBAJ_P0066543	RRM_1	PF00076.22	2.1e-65	2	3
MGP_CBAJ_P0066543	RRM_1	PF00076.22	2.1e-65	3	3
MGP_CBAJ_P0066540	RRM_1	PF00076.22	2.4e-65	1	3
MGP_CBAJ_P0066540	RRM_1	PF00076.22	2.4e-65	2	3
MGP_CBAJ_P0066540	RRM_1	PF00076.22	2.4e-65	3	3
MGP_CBAJ_P0066539	RRM_1	PF00076.22	2.4e-65	1	3
MGP_CBAJ_P0066539	RRM_1	PF00076.22	2.4e-65	2	3
MGP_CBAJ_P0066539	RRM_1	PF00076.22	2.4e-65	3	3
MGP_CBAJ_P0066545	RRM_1	PF00076.22	2.5e-65	1	3
MGP_CBAJ_P0066545	RRM_1	PF00076.22	2.5e-65	2	3
MGP_CBAJ_P0066545	RRM_1	PF00076.22	2.5e-65	3	3
MGP_CBAJ_P0066542	RRM_1	PF00076.22	2.9e-65	1	3
MGP_CBAJ_P0066542	RRM_1	PF00076.22	2.9e-65	2	3
MGP_CBAJ_P0066542	RRM_1	PF00076.22	2.9e-65	3	3
MGP_CBAJ_P0066541	RRM_1	PF00076.22	2.9e-65	1	3
MGP_CBAJ_P0066541	RRM_1	PF00076.22	2.9e-65	2	3
MGP_CBAJ_P0066541	RRM_1	PF00076.22	2.9e-65	3	3
MGP_CBAJ_P0066544	RRM_1	PF00076.22	3e-65	1	3
MGP_CBAJ_P0066544	RRM_1	PF00076.22	3e-65	2	3
MGP_CBAJ_P0066544	RRM_1	PF00076.22	3e-65	3	3
MGP_CBAJ_P0066547	RRM_1	PF00076.22	1.2e-20	1	1
MGP_CBAJ_P0066549	RRM_1	PF00076.22	6.8e-13	1	1
MGP_CBAJ_P0066550	RRM_1	PF00076.22	9.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0066550	-	488	-	MGP_CBAJ_P0066550	92 (aa)	-	-
MGP_CBAJ_T0066548	-	464	-	-	- (aa)	-	-
MGP_CBAJ_T0066549	-	663	-	MGP_CBAJ_P0066549	94 (aa)	-	-
MGP_CBAJ_T0066544	-	4148	-	MGP_CBAJ_P0066544	385 (aa)	-	-
MGP_CBAJ_T0066545	-	4106	-	MGP_CBAJ_P0066545	371 (aa)	-	-
MGP_CBAJ_T0066546	-	869	-	-	- (aa)	-	-
MGP_CBAJ_T0066547	-	644	-	MGP_CBAJ_P0066547	137 (aa)	-	-
MGP_CBAJ_T0066540	-	3774	-	MGP_CBAJ_P0066540	366 (aa)	-	-
MGP_CBAJ_T0066541	-	3798	-	MGP_CBAJ_P0066541	383 (aa)	-	-
MGP_CBAJ_T0066542	-	4023	-	MGP_CBAJ_P0066542	380 (aa)	-	-
MGP_CBAJ_T0066543	-	3760	-	MGP_CBAJ_P0066543	356 (aa)	-	-
MGP_CBAJ_T0066539	-	3996	XM_006502793	MGP_CBAJ_P0066539	366 (aa)	XP_006502856	Q61701

Gene Model

Click here to download MGP_CBAJ_G0028241's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0028241's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0028241	Elavl4	94	35.897	MGP_CBAJ_G0030638	Tia1	98	32.895
MGP_CBAJ_G0028241	Elavl4	90	30.625	MGP_CBAJ_G0028401	Pabpc4	98	35.294
MGP_CBAJ_G0028241	Elavl4	88	34.940	MGP_CBAJ_G0024072	Pabpc2	59	34.940
MGP_CBAJ_G0028241	Elavl4	89	33.735	MGP_CBAJ_G0026528	Pabpc1l	62	33.735
MGP_CBAJ_G0028241	Elavl4	67	34.118	MGP_CBAJ_G0033470	-	59	33.708
MGP_CBAJ_G0028241	Elavl4	72	35.821	MGP_CBAJ_G0030391	Tra2a	59	37.097
MGP_CBAJ_G0028241	Elavl4	88	36.145	MGP_CBAJ_G0021507	-	57	36.145
MGP_CBAJ_G0028241	Elavl4	54	33.784	MGP_CBAJ_G0027303	Rbm8a	62	30.693
MGP_CBAJ_G0028241	Elavl4	57	37.037	MGP_CBAJ_G0029760	Snrnp35	59	33.803
MGP_CBAJ_G0028241	Elavl4	89	73.585	MGP_CBAJ_G0033001	Elavl1	98	73.585
MGP_CBAJ_G0028241	Elavl4	66	42.373	MGP_CBAJ_G0017227	Dazap1	64	30.275
MGP_CBAJ_G0028241	Elavl4	70	38.889	MGP_CBAJ_G0017221	Cirbp	84	38.889
MGP_CBAJ_G0028241	Elavl4	85	40.741	MGP_CBAJ_G0027235	Celf3	61	40.741
MGP_CBAJ_G0028241	Elavl4	70	35.484	MGP_CBAJ_G0026882	Pabpc4l	96	30.065
MGP_CBAJ_G0028241	Elavl4	88	35.897	MGP_CBAJ_G0032753	Tial1	73	35.897
MGP_CBAJ_G0028241	Elavl4	74	33.708	MGP_CBAJ_G0035395	Rbmx	86	33.708
MGP_CBAJ_G0028241	Elavl4	70	36.458	MGP_CBAJ_G0035052	Rbms3	83	37.097
MGP_CBAJ_G0028241	Elavl4	88	32.468	MGP_CBAJ_G0022842	Pabpc6	60	32.468
MGP_CBAJ_G0028241	Elavl4	88	38.272	MGP_CBAJ_G0023910	Celf4	91	35.802
MGP_CBAJ_G0028241	Elavl4	99	89.315	MGP_CBAJ_G0028108	Elavl2	100	89.751
MGP_CBAJ_G0028241	Elavl4	85	40.741	MGP_CBAJ_G0034556	Celf6	95	35.802
MGP_CBAJ_G0028241	Elavl4	70	36.458	MGP_CBAJ_G0025476	Rbms1	53	32.773
MGP_CBAJ_G0028241	Elavl4	58	31.646	MGP_CBAJ_G0035193	Rbm3	82	38.710
MGP_CBAJ_G0028241	Elavl4	99	79.893	MGP_CBAJ_G0034128	Elavl3	99	80.323
MGP_CBAJ_G0028241	Elavl4	78	30.088	MGP_CBAJ_G0018650	Msi2	84	30.208
MGP_CBAJ_G0028241	Elavl4	78	40.741	MGP_CBAJ_G0025836	Celf1	62	40.741
MGP_CBAJ_G0028241	Elavl4	81	38.272	MGP_CBAJ_G0025044	Celf2	61	38.272