EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0028401 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 4
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 46871 bases
Position: chr4:132788860-132835730
Accession: 2385206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0067230	PABP	PF00658.18	3.2e-31	1	1
MGP_CBAJ_P0067226	PABP	PF00658.18	3.3e-31	1	1
MGP_CBAJ_P0067227	PABP	PF00658.18	3.5e-31	1	1
MGP_CBAJ_P0067229	PABP	PF00658.18	3.7e-31	1	1
MGP_CBAJ_P0067230	RRM_5	PF13893.6	3.6e-09	1	2
MGP_CBAJ_P0067230	RRM_5	PF13893.6	3.6e-09	2	2
MGP_CBAJ_P0067226	RRM_5	PF13893.6	4.6e-09	1	1
MGP_CBAJ_P0067227	RRM_5	PF13893.6	5e-09	1	1
MGP_CBAJ_P0067229	RRM_5	PF13893.6	5.8e-09	1	1
MGP_CBAJ_P0067230	RRM_1	PF00076.22	4.4e-90	1	4
MGP_CBAJ_P0067230	RRM_1	PF00076.22	4.4e-90	2	4
MGP_CBAJ_P0067230	RRM_1	PF00076.22	4.4e-90	3	4
MGP_CBAJ_P0067230	RRM_1	PF00076.22	4.4e-90	4	4
MGP_CBAJ_P0067226	RRM_1	PF00076.22	4.7e-90	1	4
MGP_CBAJ_P0067226	RRM_1	PF00076.22	4.7e-90	2	4
MGP_CBAJ_P0067226	RRM_1	PF00076.22	4.7e-90	3	4
MGP_CBAJ_P0067226	RRM_1	PF00076.22	4.7e-90	4	4
MGP_CBAJ_P0067227	RRM_1	PF00076.22	5.2e-90	1	4
MGP_CBAJ_P0067227	RRM_1	PF00076.22	5.2e-90	2	4
MGP_CBAJ_P0067227	RRM_1	PF00076.22	5.2e-90	3	4
MGP_CBAJ_P0067227	RRM_1	PF00076.22	5.2e-90	4	4
MGP_CBAJ_P0067229	RRM_1	PF00076.22	6e-90	1	4
MGP_CBAJ_P0067229	RRM_1	PF00076.22	6e-90	2	4
MGP_CBAJ_P0067229	RRM_1	PF00076.22	6e-90	3	4
MGP_CBAJ_P0067229	RRM_1	PF00076.22	6e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0067228	-	2636	-	MGP_CBAJ_P0067228	103 (aa)	-	-
MGP_CBAJ_T0067229	-	3037	-	MGP_CBAJ_P0067229	657 (aa)	-	-
MGP_CBAJ_T0067226	-	3130	-	MGP_CBAJ_P0067226	628 (aa)	-	-
MGP_CBAJ_T0067227	-	3069	-	MGP_CBAJ_P0067227	641 (aa)	-	-
MGP_CBAJ_T0067225	-	245	-	-	- (aa)	-	-
MGP_CBAJ_T0067231	-	1950	-	MGP_CBAJ_P0067231	649 (aa)	-	-
MGP_CBAJ_T0067230	-	2718	-	MGP_CBAJ_P0067230	621 (aa)	-	-
MGP_CBAJ_T0067233	-	1146	-	-	- (aa)	-	-
MGP_CBAJ_T0067232	-	692	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0028401's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0028401's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0028401	Pabpc4	68	33.333	MGP_CBAJ_G0025836	Celf1	70	38.636
MGP_CBAJ_G0028401	Pabpc4	100	33.333	MGP_CBAJ_G0032753	Tial1	94	30.233
MGP_CBAJ_G0028401	Pabpc4	66	30.882	MGP_CBAJ_G0026122	Myef2	56	35.526
MGP_CBAJ_G0028401	Pabpc4	98	35.294	MGP_CBAJ_G0028241	Elavl4	90	30.625
MGP_CBAJ_G0028401	Pabpc4	100	69.000	MGP_CBAJ_G0026882	Pabpc4l	98	70.552
MGP_CBAJ_G0028401	Pabpc4	100	33.824	MGP_CBAJ_G0034128	Elavl3	92	32.941
MGP_CBAJ_G0028401	Pabpc4	68	37.500	MGP_CBAJ_G0035193	Rbm3	87	40.000
MGP_CBAJ_G0028401	Pabpc4	100	33.333	MGP_CBAJ_G0030638	Tia1	95	33.333
MGP_CBAJ_G0028401	Pabpc4	77	36.709	MGP_CBAJ_G0019190	Rbfox3	67	39.130
MGP_CBAJ_G0028401	Pabpc4	56	31.098	MGP_CBAJ_G0020336	Hnrnpa0	50	31.847
MGP_CBAJ_G0028401	Pabpc4	98	35.294	MGP_CBAJ_G0028108	Elavl2	89	34.940
MGP_CBAJ_G0028401	Pabpc4	97	80.000	MGP_CBAJ_G0026733	-	100	80.503
MGP_CBAJ_G0028401	Pabpc4	100	70.874	MGP_CBAJ_G0035698	Pabpc5	94	65.470
MGP_CBAJ_G0028401	Pabpc4	66	34.783	MGP_CBAJ_G0015777	Boll	60	34.722
MGP_CBAJ_G0028401	Pabpc4	100	94.175	MGP_CBAJ_G0021507	-	79	93.548
MGP_CBAJ_G0028401	Pabpc4	67	35.211	MGP_CBAJ_G0034556	Celf6	68	37.113
MGP_CBAJ_G0028401	Pabpc4	67	32.394	MGP_CBAJ_G0027235	Celf3	69	33.784
MGP_CBAJ_G0028401	Pabpc4	100	87.379	MGP_CBAJ_G0022842	Pabpc6	99	67.551
MGP_CBAJ_G0028401	Pabpc4	100	78.641	MGP_CBAJ_G0026528	Pabpc1l	99	60.194
MGP_CBAJ_G0028401	Pabpc4	100	89.320	MGP_CBAJ_G0024072	Pabpc2	99	66.719
MGP_CBAJ_G0028401	Pabpc4	100	36.765	MGP_CBAJ_G0033001	Elavl1	95	33.553
MGP_CBAJ_G0028401	Pabpc4	68	34.722	MGP_CBAJ_G0035395	Rbmx	77	37.662
MGP_CBAJ_G0028401	Pabpc4	68	34.722	MGP_CBAJ_G0033470	-	52	36.364
MGP_CBAJ_G0028401	Pabpc4	67	33.803	MGP_CBAJ_G0023910	Celf4	58	35.052
MGP_CBAJ_G0028401	Pabpc4	68	31.944	MGP_CBAJ_G0025044	Celf2	59	37.500