EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0028530 (Gene tree)
Gene ID: -
Gene Symbol: Trnau1ap
Alias: 1110007F05Rik|AA387999|SECp43|Secp43|Trspap1|WI1-2643G14.2
Full Name: tRNA selenocysteine 1 associated protein 1
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 17792 bases
Position: chr4:142879310-142897101
Accession: 1919037
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0067836	RRM_1	PF00076.22	9.8e-27	1	2
MGP_CBAJ_P0067836	RRM_1	PF00076.22	9.8e-27	2	2
MGP_CBAJ_P0067837	RRM_1	PF00076.22	3.3e-17	1	1
MGP_CBAJ_P0067841	RRM_1	PF00076.22	1.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0067842	-	600	-	MGP_CBAJ_P0067842	47 (aa)	-	-
MGP_CBAJ_T0067843	-	553	-	-	- (aa)	-	-
MGP_CBAJ_T0067840	-	1017	-	MGP_CBAJ_P0067840	86 (aa)	-	-
MGP_CBAJ_T0067841	-	474	-	MGP_CBAJ_P0067841	146 (aa)	-	-
MGP_CBAJ_T0067846	-	371	-	MGP_CBAJ_P0067846	70 (aa)	-	-
MGP_CBAJ_T0067847	-	621	-	-	- (aa)	-	-
MGP_CBAJ_T0067844	-	663	-	MGP_CBAJ_P0067844	49 (aa)	-	-
MGP_CBAJ_T0067845	-	679	-	-	- (aa)	-	-
MGP_CBAJ_T0067837	-	961	-	MGP_CBAJ_P0067837	247 (aa)	-	-
MGP_CBAJ_T0067836	-	1130	XM_011250332	MGP_CBAJ_P0067836	287 (aa)	XP_011248634	Q80VC6
MGP_CBAJ_T0067839	-	650	-	-	- (aa)	-	-
MGP_CBAJ_T0067838	-	1791	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0028530's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0028530's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0028530	Trnau1ap	88	34.211	MGP_CBAJ_G0026882	Pabpc4l	89	31.875
MGP_CBAJ_G0028530	Trnau1ap	98	30.952	MGP_CBAJ_G0028108	Elavl2	66	30.952
MGP_CBAJ_G0028530	Trnau1ap	60	32.386	MGP_CBAJ_G0032753	Tial1	73	33.019
MGP_CBAJ_G0028530	Trnau1ap	79	30.198	MGP_CBAJ_G0030638	Tia1	60	31.285