EuRBPDB

Description

Ensembl ID: MGP_CBAJ_G0028627 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpr
Alias: 2610003J05Rik|2610528B01Rik|Hnrpr|Hnrpr {ECO:0000313|EMBL:AAH38051.1,GN ECO:0000313|MGI:MGI:1891692}|hnRNPR
Full Name: heterogeneous nuclear ribonucleoprotein R
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 66201 bases
Position: chr4:147717001-147783201
Accession: 1891692
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0068272	RRM_1	PF00076.22	1.4e-43	1	3
MGP_CBAJ_P0068272	RRM_1	PF00076.22	1.4e-43	2	3
MGP_CBAJ_P0068272	RRM_1	PF00076.22	1.4e-43	3	3
MGP_CBAJ_P0068275	RRM_1	PF00076.22	5.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0068278	-	1916	-	-	- (aa)	-	-
MGP_CBAJ_T0068272	-	20406	XM_006539221	MGP_CBAJ_P0068272	519 (aa)	XP_006539284	A2AW40
MGP_CBAJ_T0068273	-	859	-	MGP_CBAJ_P0068273	103 (aa)	-	-
MGP_CBAJ_T0068274	-	576	-	MGP_CBAJ_P0068274	72 (aa)	-	-
MGP_CBAJ_T0068275	-	980	-	MGP_CBAJ_P0068275	270 (aa)	-	-
MGP_CBAJ_T0068276	-	292	-	MGP_CBAJ_P0068276	73 (aa)	-	-
MGP_CBAJ_T0068277	-	473	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0028627	Hnrnpr	59	56.329	MGP_CBAJ_G0027021	Rbm46	65	56.774
MGP_CBAJ_G0028627	Hnrnpr	77	48.642	MGP_CBAJ_G0029256	Rbm47	88	59.859
MGP_CBAJ_G0028627	Hnrnpr	57	37.908	MGP_CBAJ_G0023991	Dnd1	62	33.040
MGP_CBAJ_G0028627	Hnrnpr	99	81.716	MGP_CBAJ_G0034763	Syncrip	87	81.911
MGP_CBAJ_G0028627	Hnrnpr	61	52.997	MGP_CBAJ_G0024747	A1cf	52	53.896