EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0068876	RRM_1	PF00076.22	1.2e-26	1	2
MGP_CBAJ_P0068876	RRM_1	PF00076.22	1.2e-26	2	2
MGP_CBAJ_P0068856	RRM_1	PF00076.22	4.5e-26	1	2
MGP_CBAJ_P0068856	RRM_1	PF00076.22	4.5e-26	2	2
MGP_CBAJ_P0068873	RRM_1	PF00076.22	4.5e-26	1	2
MGP_CBAJ_P0068873	RRM_1	PF00076.22	4.5e-26	2	2
MGP_CBAJ_P0068854	RRM_1	PF00076.22	4.8e-26	1	2
MGP_CBAJ_P0068854	RRM_1	PF00076.22	4.8e-26	2	2
MGP_CBAJ_P0068874	RRM_1	PF00076.22	4.8e-26	1	2
MGP_CBAJ_P0068874	RRM_1	PF00076.22	4.8e-26	2	2
MGP_CBAJ_P0068855	RRM_1	PF00076.22	4.9e-26	1	2
MGP_CBAJ_P0068855	RRM_1	PF00076.22	4.9e-26	2	2
MGP_CBAJ_P0068875	RRM_1	PF00076.22	4.9e-26	1	2
MGP_CBAJ_P0068875	RRM_1	PF00076.22	4.9e-26	2	2
MGP_CBAJ_P0068853	RRM_1	PF00076.22	1.2e-25	1	2
MGP_CBAJ_P0068853	RRM_1	PF00076.22	1.2e-25	2	2
MGP_CBAJ_P0068878	RRM_1	PF00076.22	4e-15	1	1
MGP_CBAJ_P0068879	RRM_1	PF00076.22	4.9e-11	1	1
MGP_CBAJ_P0068872	RRM_1	PF00076.22	6.6e-09	1	1
MGP_CBAJ_P0068871	RRM_1	PF00076.22	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0068880	-	370	-	-	- (aa)	-	-
MGP_CBAJ_T0068869	-	684	-	MGP_CBAJ_P0068869	137 (aa)	-	-
MGP_CBAJ_T0068868	-	1304	-	MGP_CBAJ_P0068868	285 (aa)	-	-
MGP_CBAJ_T0068865	-	987	-	MGP_CBAJ_P0068865	34 (aa)	-	-
MGP_CBAJ_T0068864	-	2006	-	MGP_CBAJ_P0068864	298 (aa)	-	-
MGP_CBAJ_T0068867	-	781	-	MGP_CBAJ_P0068867	140 (aa)	-	-
MGP_CBAJ_T0068866	-	741	-	MGP_CBAJ_P0068866	175 (aa)	-	-
MGP_CBAJ_T0068861	-	884	-	-	- (aa)	-	-
MGP_CBAJ_T0068860	-	676	-	MGP_CBAJ_P0068860	88 (aa)	-	-
MGP_CBAJ_T0068863	-	358	-	-	- (aa)	-	-
MGP_CBAJ_T0068862	-	613	-	-	- (aa)	-	-
MGP_CBAJ_T0068854	-	6042	-	MGP_CBAJ_P0068854	304 (aa)	-	-
MGP_CBAJ_T0068855	-	5954	-	MGP_CBAJ_P0068855	302 (aa)	-	-
MGP_CBAJ_T0068856	-	6024	-	MGP_CBAJ_P0068856	298 (aa)	-	-
MGP_CBAJ_T0068857	-	1773	-	MGP_CBAJ_P0068857	298 (aa)	-	-
MGP_CBAJ_T0068853	-	6982	XM_011250237	MGP_CBAJ_P0068853	414 (aa)	XP_011248539	Q921F2
MGP_CBAJ_T0068858	-	731	-	-	- (aa)	-	-
MGP_CBAJ_T0068859	-	529	-	MGP_CBAJ_P0068859	98 (aa)	-	-
MGP_CBAJ_T0068878	-	818	-	MGP_CBAJ_P0068878	243 (aa)	-	-
MGP_CBAJ_T0068879	-	740	-	MGP_CBAJ_P0068879	149 (aa)	-	-
MGP_CBAJ_T0068876	-	709	-	MGP_CBAJ_P0068876	199 (aa)	-	-
MGP_CBAJ_T0068877	-	1411	-	MGP_CBAJ_P0068877	84 (aa)	-	-
MGP_CBAJ_T0068874	-	1011	-	MGP_CBAJ_P0068874	304 (aa)	-	-
MGP_CBAJ_T0068875	-	923	-	MGP_CBAJ_P0068875	302 (aa)	-	-
MGP_CBAJ_T0068872	-	491	-	MGP_CBAJ_P0068872	128 (aa)	-	-
MGP_CBAJ_T0068873	-	1096	-	MGP_CBAJ_P0068873	298 (aa)	-	-
MGP_CBAJ_T0068870	-	517	-	MGP_CBAJ_P0068870	77 (aa)	-	-
MGP_CBAJ_T0068871	-	733	-	MGP_CBAJ_P0068871	84 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0028793	Tardbp	86	33.146	MGP_CBAJ_G0017995	Hnrnpab	82	32.099
MGP_CBAJ_G0028793	Tardbp	77	31.447	MGP_CBAJ_G0029451	Hnrnpdl	64	30.000
MGP_CBAJ_G0028793	Tardbp	66	34.074	MGP_CBAJ_G0022137	Hnrnpa1	50	30.151
MGP_CBAJ_G0028793	Tardbp	88	31.818	MGP_CBAJ_G0017227	Dazap1	89	35.065
MGP_CBAJ_G0028793	Tardbp	77	38.194	MGP_CBAJ_G0029449	Hnrnpd	100	64.000
MGP_CBAJ_G0028793	Tardbp	92	35.000	MGP_CBAJ_G0035395	Rbmx	78	35.000
MGP_CBAJ_G0028793	Tardbp	94	30.282	MGP_CBAJ_G0030402	Hnrnpa2b1	66	30.348
MGP_CBAJ_G0028793	Tardbp	79	31.818	MGP_CBAJ_G0018650	Msi2	100	35.398
MGP_CBAJ_G0028793	Tardbp	72	38.806	MGP_CBAJ_G0033001	Elavl1	59	31.481
MGP_CBAJ_G0028793	Tardbp	80	30.345	MGP_CBAJ_G0025569	Hnrnpa3	51	30.769
MGP_CBAJ_G0028793	Tardbp	79	34.021	MGP_CBAJ_G0029632	Msi1	62	34.021