EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0029632 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 28506 bases
Position: chr5:127585629-127614134
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0073292	RRM_1	PF00076.22	6.9e-33	1	2
MGP_CBAJ_P0073292	RRM_1	PF00076.22	6.9e-33	2	2
MGP_CBAJ_P0073293	RRM_1	PF00076.22	1.6e-28	1	2
MGP_CBAJ_P0073293	RRM_1	PF00076.22	1.6e-28	2	2
MGP_CBAJ_P0073297	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0073298	-	599	-	-	- (aa)	-	-
MGP_CBAJ_T0073292	-	2283	-	MGP_CBAJ_P0073292	362 (aa)	-	-
MGP_CBAJ_T0073293	-	807	-	MGP_CBAJ_P0073293	268 (aa)	-	-
MGP_CBAJ_T0073291	-	2626	-	-	- (aa)	-	-
MGP_CBAJ_T0073296	-	581	-	-	- (aa)	-	-
MGP_CBAJ_T0073297	-	726	-	MGP_CBAJ_P0073297	196 (aa)	-	-
MGP_CBAJ_T0073294	-	367	-	-	- (aa)	-	-
MGP_CBAJ_T0073295	-	806	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0029632's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0029632's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0029632	Msi1	61	51.064	MGP_CBAJ_G0026647	Rbm38	66	46.809
MGP_CBAJ_G0029632	Msi1	62	34.021	MGP_CBAJ_G0028793	Tardbp	79	34.021
MGP_CBAJ_G0029632	Msi1	59	38.125	MGP_CBAJ_G0025569	Hnrnpa3	66	37.344
MGP_CBAJ_G0029632	Msi1	57	42.949	MGP_CBAJ_G0020336	Hnrnpa0	59	43.646
MGP_CBAJ_G0029632	Msi1	56	41.379	MGP_CBAJ_G0032753	Tial1	69	31.469
MGP_CBAJ_G0029632	Msi1	99	75.665	MGP_CBAJ_G0018650	Msi2	100	90.323
MGP_CBAJ_G0029632	Msi1	61	43.750	MGP_CBAJ_G0030402	Hnrnpa2b1	91	41.379
MGP_CBAJ_G0029632	Msi1	58	48.052	MGP_CBAJ_G0029451	Hnrnpdl	75	39.676
MGP_CBAJ_G0029632	Msi1	58	48.052	MGP_CBAJ_G0017995	Hnrnpab	79	40.800
MGP_CBAJ_G0029632	Msi1	59	49.485	MGP_CBAJ_G0029449	Hnrnpd	100	68.000
MGP_CBAJ_G0029632	Msi1	51	38.983	MGP_CBAJ_G0017221	Cirbp	87	40.351
MGP_CBAJ_G0029632	Msi1	88	42.308	MGP_CBAJ_G0017227	Dazap1	98	44.311