EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0029760 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp35
Alias: 6330548G22Rik|U1snrnpbp
Full Name: small nuclear ribonucleoprotein 35 (U11/U12)
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 9200 bases
Position: chr5:138510254-138519453
Accession: 1923417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0074053	RRM_1	PF00076.22	1.1e-16	1	1
MGP_CBAJ_P0074052	RRM_1	PF00076.22	1.3e-16	1	1
MGP_CBAJ_P0074054	RRM_1	PF00076.22	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0074054	-	1181	-	MGP_CBAJ_P0074054	244 (aa)	-	-
MGP_CBAJ_T0074053	-	449	-	MGP_CBAJ_P0074053	121 (aa)	-	-
MGP_CBAJ_T0074052	-	1115	XM_006530494	MGP_CBAJ_P0074052	244 (aa)	XP_006530557	Q9D384

Gene Model

Click here to download MGP_CBAJ_G0029760's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0029760's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0029760	Snrnp35	61	48.649	MGP_CBAJ_G0031888	Snrnp70	70	46.667
MGP_CBAJ_G0029760	Snrnp35	59	33.803	MGP_CBAJ_G0028241	Elavl4	57	37.037
MGP_CBAJ_G0029760	Snrnp35	51	35.484	MGP_CBAJ_G0029449	Hnrnpd	57	31.884
MGP_CBAJ_G0029760	Snrnp35	55	36.364	MGP_CBAJ_G0035395	Rbmx	71	35.616
MGP_CBAJ_G0029760	Snrnp35	60	37.500	MGP_CBAJ_G0028108	Elavl2	67	35.714
MGP_CBAJ_G0029760	Snrnp35	55	34.848	MGP_CBAJ_G0035193	Rbm3	73	33.333