EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0030499 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 173699 bases
Position: chr6:70032118-70205816
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0077481	zf-C2H2	PF00096.26	5.6e-59	1	9
MGP_CBAJ_P0077481	zf-C2H2	PF00096.26	5.6e-59	2	9
MGP_CBAJ_P0077481	zf-C2H2	PF00096.26	5.6e-59	3	9
MGP_CBAJ_P0077481	zf-C2H2	PF00096.26	5.6e-59	4	9
MGP_CBAJ_P0077481	zf-C2H2	PF00096.26	5.6e-59	5	9
MGP_CBAJ_P0077481	zf-C2H2	PF00096.26	5.6e-59	6	9
MGP_CBAJ_P0077481	zf-C2H2	PF00096.26	5.6e-59	7	9
MGP_CBAJ_P0077481	zf-C2H2	PF00096.26	5.6e-59	8	9
MGP_CBAJ_P0077481	zf-C2H2	PF00096.26	5.6e-59	9	9
MGP_CBAJ_P0077476	zf-C2H2	PF00096.26	1e-58	1	9
MGP_CBAJ_P0077476	zf-C2H2	PF00096.26	1e-58	2	9
MGP_CBAJ_P0077476	zf-C2H2	PF00096.26	1e-58	3	9
MGP_CBAJ_P0077476	zf-C2H2	PF00096.26	1e-58	4	9
MGP_CBAJ_P0077476	zf-C2H2	PF00096.26	1e-58	5	9
MGP_CBAJ_P0077476	zf-C2H2	PF00096.26	1e-58	6	9
MGP_CBAJ_P0077476	zf-C2H2	PF00096.26	1e-58	7	9
MGP_CBAJ_P0077476	zf-C2H2	PF00096.26	1e-58	8	9
MGP_CBAJ_P0077476	zf-C2H2	PF00096.26	1e-58	9	9
MGP_CBAJ_P0077479	zf-C2H2	PF00096.26	1e-48	1	9
MGP_CBAJ_P0077479	zf-C2H2	PF00096.26	1e-48	2	9
MGP_CBAJ_P0077479	zf-C2H2	PF00096.26	1e-48	3	9
MGP_CBAJ_P0077479	zf-C2H2	PF00096.26	1e-48	4	9
MGP_CBAJ_P0077479	zf-C2H2	PF00096.26	1e-48	5	9
MGP_CBAJ_P0077479	zf-C2H2	PF00096.26	1e-48	6	9
MGP_CBAJ_P0077479	zf-C2H2	PF00096.26	1e-48	7	9
MGP_CBAJ_P0077479	zf-C2H2	PF00096.26	1e-48	8	9
MGP_CBAJ_P0077479	zf-C2H2	PF00096.26	1e-48	9	9
MGP_CBAJ_P0077478	zf-C2H2	PF00096.26	8.1e-27	1	5
MGP_CBAJ_P0077478	zf-C2H2	PF00096.26	8.1e-27	2	5
MGP_CBAJ_P0077478	zf-C2H2	PF00096.26	8.1e-27	3	5
MGP_CBAJ_P0077478	zf-C2H2	PF00096.26	8.1e-27	4	5
MGP_CBAJ_P0077478	zf-C2H2	PF00096.26	8.1e-27	5	5
MGP_CBAJ_P0077481	zf-met	PF12874.7	1.5e-20	1	3
MGP_CBAJ_P0077481	zf-met	PF12874.7	1.5e-20	2	3
MGP_CBAJ_P0077481	zf-met	PF12874.7	1.5e-20	3	3
MGP_CBAJ_P0077476	zf-met	PF12874.7	2.7e-20	1	3
MGP_CBAJ_P0077476	zf-met	PF12874.7	2.7e-20	2	3
MGP_CBAJ_P0077476	zf-met	PF12874.7	2.7e-20	3	3
MGP_CBAJ_P0077479	zf-met	PF12874.7	8.8e-17	1	3
MGP_CBAJ_P0077479	zf-met	PF12874.7	8.8e-17	2	3
MGP_CBAJ_P0077479	zf-met	PF12874.7	8.8e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0077479	-	1488	-	MGP_CBAJ_P0077479	415 (aa)	-	-
MGP_CBAJ_T0077476	-	2155	XM_006506600	MGP_CBAJ_P0077476	599 (aa)	XP_006506663	Q9CXE0
MGP_CBAJ_T0077477	-	1937	-	-	- (aa)	-	-
MGP_CBAJ_T0077482	-	1920	-	-	- (aa)	-	-
MGP_CBAJ_T0077478	-	984	-	MGP_CBAJ_P0077478	221 (aa)	-	-
MGP_CBAJ_T0077480	-	4158	-	-	- (aa)	-	-
MGP_CBAJ_T0077481	-	1740	-	MGP_CBAJ_P0077481	579 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0030499's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0030499's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0030499	Prdm5	79	47.778	MGP_CBAJ_G0020428	-	61	38.596
MGP_CBAJ_G0030499	Prdm5	84	36.545	MGP_CBAJ_G0018126	Zfp867	94	36.545
MGP_CBAJ_G0030499	Prdm5	67	46.667	MGP_CBAJ_G0031523	Zfp574	85	30.051
MGP_CBAJ_G0030499	Prdm5	82	40.076	MGP_CBAJ_G0034135	Zfp872	99	40.530
MGP_CBAJ_G0030499	Prdm5	91	39.062	MGP_CBAJ_G0021719	Zfp251	66	43.005
MGP_CBAJ_G0030499	Prdm5	90	35.235	MGP_CBAJ_G0022959	Zscan10	79	35.235
MGP_CBAJ_G0030499	Prdm5	70	48.315	MGP_CBAJ_G0022951	Zfp945	82	35.252
MGP_CBAJ_G0030499	Prdm5	76	39.796	MGP_CBAJ_G0033431	Zfp709	88	39.796
MGP_CBAJ_G0030499	Prdm5	61	45.045	MGP_CBAJ_G0025925	Wt1	55	40.876
MGP_CBAJ_G0030499	Prdm5	74	41.463	MGP_CBAJ_G0029510	Gfi1	99	45.133
MGP_CBAJ_G0030499	Prdm5	90	46.067	MGP_CBAJ_G0026587	Zfp334	67	40.000
MGP_CBAJ_G0030499	Prdm5	88	42.857	MGP_CBAJ_G0018076	Zfp672	86	44.286
MGP_CBAJ_G0030499	Prdm5	83	38.014	MGP_CBAJ_G0020405	Zfp759	94	38.870
MGP_CBAJ_G0030499	Prdm5	84	43.277	MGP_CBAJ_G0020404	Rslcan18	71	38.800
MGP_CBAJ_G0030499	Prdm5	91	48.387	MGP_CBAJ_G0031659	Zfp420	95	41.722
MGP_CBAJ_G0030499	Prdm5	95	43.220	MGP_CBAJ_G0022928	Zfp677	78	36.027
MGP_CBAJ_G0030499	Prdm5	73	40.562	MGP_CBAJ_G0032703	Zfp768	53	43.571
MGP_CBAJ_G0030499	Prdm5	74	37.838	MGP_CBAJ_G0032707	E430018J23Rik	71	37.838
MGP_CBAJ_G0030499	Prdm5	77	38.754	MGP_CBAJ_G0032704	-	68	38.754
MGP_CBAJ_G0030499	Prdm5	79	40.244	MGP_CBAJ_G0029174	Zbtb49	96	45.070
MGP_CBAJ_G0030499	Prdm5	68	48.544	MGP_CBAJ_G0033884	Snai3	55	42.336
MGP_CBAJ_G0030499	Prdm5	68	47.826	MGP_CBAJ_G0031492	Zfp61	54	41.102
MGP_CBAJ_G0030499	Prdm5	74	48.913	MGP_CBAJ_G0031493	Zfp94	77	38.489
MGP_CBAJ_G0030499	Prdm5	68	46.154	MGP_CBAJ_G0031490	Zfp108	66	38.411
MGP_CBAJ_G0030499	Prdm5	67	47.368	MGP_CBAJ_G0031491	Zfp93	60	39.300
MGP_CBAJ_G0030499	Prdm5	97	39.286	MGP_CBAJ_G0022930	Zfp51	98	39.286
MGP_CBAJ_G0030499	Prdm5	78	34.752	MGP_CBAJ_G0033644	Zfp319	88	34.602
MGP_CBAJ_G0030499	Prdm5	69	47.857	MGP_CBAJ_G0031485	Zfp112	68	39.711
MGP_CBAJ_G0030499	Prdm5	85	36.760	MGP_CBAJ_G0031596	Zfp780b	89	36.066
MGP_CBAJ_G0030499	Prdm5	76	40.000	MGP_CBAJ_G0018713	Zfp652	50	36.242
MGP_CBAJ_G0030499	Prdm5	81	42.941	MGP_CBAJ_G0026162	Zfp661	65	42.941
MGP_CBAJ_G0030499	Prdm5	73	44.286	MGP_CBAJ_G0031486	Zfp235	68	39.404
MGP_CBAJ_G0030499	Prdm5	78	38.571	MGP_CBAJ_G0017981	Zfp454	68	38.571
MGP_CBAJ_G0030499	Prdm5	68	42.361	MGP_CBAJ_G0030369	Repin1	91	33.016
MGP_CBAJ_G0030499	Prdm5	84	32.735	MGP_CBAJ_G0031237	Zfp865	78	32.895
MGP_CBAJ_G0030499	Prdm5	74	40.104	MGP_CBAJ_G0031229	Zfp628	60	38.208
MGP_CBAJ_G0030499	Prdm5	77	44.643	MGP_CBAJ_G0030842	Zfp637	83	46.479
MGP_CBAJ_G0030499	Prdm5	87	46.739	MGP_CBAJ_G0024306	Zfp236	77	43.860
MGP_CBAJ_G0030499	Prdm5	90	42.609	MGP_CBAJ_G0033432	Zfp882	94	35.714
MGP_CBAJ_G0030499	Prdm5	75	34.545	MGP_CBAJ_G0026625	Zfp64	69	31.561
MGP_CBAJ_G0030499	Prdm5	72	48.760	MGP_CBAJ_G0031792	Zfp715	66	39.333
MGP_CBAJ_G0030499	Prdm5	67	50.847	MGP_CBAJ_G0033801	Zfp1	67	40.167