EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0030715 (Gene tree)
Gene ID: -
Gene Symbol: Lsm3
Alias: 1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2
Full Name: LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 6690 bases
Position: chr6:99086509-99093198
Accession: 1914928
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0078526	LSM	PF01423.22	8.4e-20	1	1
MGP_CBAJ_P0078530	LSM	PF01423.22	8.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0078527	-	520	-	-	- (aa)	-	-
MGP_CBAJ_T0078526	-	743	-	MGP_CBAJ_P0078526	102 (aa)	-	P62311
MGP_CBAJ_T0078529	-	504	-	-	- (aa)	-	-
MGP_CBAJ_T0078528	-	2030	-	-	- (aa)	-	-
MGP_CBAJ_T0078530	-	618	-	MGP_CBAJ_P0078530	102 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0030715's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0030715's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0030715	Lsm3	74	30.769	MGP_CBAJ_G0031427	Snrpd2	66	30.769
MGP_CBAJ_G0030715	Lsm3	74	34.667	MGP_CBAJ_G0030447	Lsm5	82	34.667