EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0031572 (Gene tree)
Gene ID: -
Gene Symbol: Snrpa
Alias: C430021M15Rik|Rnu1a-1|Rnu1a1|U1 snRNP|U1-A|U1A
Full Name: small nuclear ribonucleoprotein polypeptide A
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 14607 bases
Position: chr7:27824775-27839381
Accession: 1855690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0082023	RRM_5	PF13893.6	4.7e-07	1	2
MGP_CBAJ_P0082023	RRM_5	PF13893.6	4.7e-07	2	2
MGP_CBAJ_P0082024	RRM_5	PF13893.6	4.7e-07	1	2
MGP_CBAJ_P0082024	RRM_5	PF13893.6	4.7e-07	2	2
MGP_CBAJ_P0082025	RRM_5	PF13893.6	4.7e-07	1	2
MGP_CBAJ_P0082025	RRM_5	PF13893.6	4.7e-07	2	2
MGP_CBAJ_P0082023	RRM_1	PF00076.22	4.5e-28	1	2
MGP_CBAJ_P0082023	RRM_1	PF00076.22	4.5e-28	2	2
MGP_CBAJ_P0082024	RRM_1	PF00076.22	4.5e-28	1	2
MGP_CBAJ_P0082024	RRM_1	PF00076.22	4.5e-28	2	2
MGP_CBAJ_P0082025	RRM_1	PF00076.22	4.5e-28	1	2
MGP_CBAJ_P0082025	RRM_1	PF00076.22	4.5e-28	2	2
MGP_CBAJ_P0082026	RRM_1	PF00076.22	1.1e-18	1	2
MGP_CBAJ_P0082026	RRM_1	PF00076.22	1.1e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0082028	-	1690	-	-	- (aa)	-	-
MGP_CBAJ_T0082023	-	1288	-	MGP_CBAJ_P0082023	287 (aa)	-	-
MGP_CBAJ_T0082022	-	509	-	-	- (aa)	-	-
MGP_CBAJ_T0082025	-	1365	-	MGP_CBAJ_P0082025	287 (aa)	-	-
MGP_CBAJ_T0082024	-	1336	-	MGP_CBAJ_P0082024	287 (aa)	-	-
MGP_CBAJ_T0082027	-	510	-	MGP_CBAJ_P0082027	44 (aa)	-	-
MGP_CBAJ_T0082026	-	968	-	MGP_CBAJ_P0082026	247 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0031572's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0031572's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0031572	Snrpa	98	88.256	MGP_CBAJ_G0034835	Gm5145	100	88.256
MGP_CBAJ_G0031572	Snrpa	97	55.235	MGP_CBAJ_G0026273	Snrpb2	99	63.121