EuRBPDB

Description

Ensembl ID: MGP_CBAJ_G0031888 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp70
Alias: 2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Snrp70 {ECO:0000313|EMBL:EDL22845.1,GN ECO:0000313|MGI:MGI:98341}|Srnp70|U1-70|U1-70K
Full Name: small nuclear ribonucleoprotein 70 (U1)
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 19066 bases
Position: chr7:49481036-49500101
Accession: 98341
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0083335	RRM_1	PF00076.22	1.1e-17	1	1
MGP_CBAJ_P0083344	RRM_1	PF00076.22	4e-13	1	1
MGP_CBAJ_P0083336	RRM_1	PF00076.22	2.1e-08	1	1
MGP_CBAJ_P0083346	U1snRNP70_N	PF12220.8	5.5e-29	1	1
MGP_CBAJ_P0083344	U1snRNP70_N	PF12220.8	1.5e-28	1	1
MGP_CBAJ_P0083335	U1snRNP70_N	PF12220.8	1.9e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0083341	-	733	-	-	- (aa)	-	-
MGP_CBAJ_T0083339	-	707	-	MGP_CBAJ_P0083339	115 (aa)	-	-
MGP_CBAJ_T0083347	-	212	-	-	- (aa)	-	-
MGP_CBAJ_T0083346	-	620	-	MGP_CBAJ_P0083346	109 (aa)	-	-
MGP_CBAJ_T0083345	-	601	-	-	- (aa)	-	-
MGP_CBAJ_T0083344	-	618	-	MGP_CBAJ_P0083344	168 (aa)	-	-
MGP_CBAJ_T0083343	-	616	-	MGP_CBAJ_P0083343	111 (aa)	-	-
MGP_CBAJ_T0083342	-	623	-	-	- (aa)	-	-
MGP_CBAJ_T0083338	-	3035	-	-	- (aa)	-	-
MGP_CBAJ_T0083340	-	2922	-	-	- (aa)	-	-
MGP_CBAJ_T0083336	-	451	-	MGP_CBAJ_P0083336	86 (aa)	-	-
MGP_CBAJ_T0083337	-	4008	-	-	- (aa)	-	-
MGP_CBAJ_T0083335	-	1735	XM_006540732	MGP_CBAJ_P0083335	448 (aa)	XP_006540795	Q62376
MGP_CBAJ_T0083349	-	579	-	-	- (aa)	-	-
MGP_CBAJ_T0083348	-	1698	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0031888	Snrnp70	70	46.667	MGP_CBAJ_G0029760	Snrnp35	61	48.649
MGP_CBAJ_G0031888	Snrnp70	52	35.000	MGP_CBAJ_G0015777	Boll	58	32.911