EuRBPDB

Description

Ensembl ID: MGP_CBAJ_G0033483 (Gene tree)
Gene ID: -
Gene Symbol: Smarca5
Alias: 4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 41123 bases
Position: chr8:87555411-87596533
Accession: 1935129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0089072	ResIII	PF04851.15	1.1e-10	1	1
MGP_CBAJ_P0089072	DEAD	PF00270.29	3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0089073	-	3285	-	-	- (aa)	-	-
MGP_CBAJ_T0089072	-	6085	-	MGP_CBAJ_P0089072	1033 (aa)	-	Q91ZW3
MGP_CBAJ_T0089077	-	722	-	-	- (aa)	-	-
MGP_CBAJ_T0089076	-	701	-	-	- (aa)	-	-
MGP_CBAJ_T0089075	-	334	-	-	- (aa)	-	-
MGP_CBAJ_T0089074	-	503	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0033483	Smarca5	93	82.454	MGP_CBAJ_G0035331	Smarca1	93	82.454
MGP_CBAJ_G0033483	Smarca5	54	40.236	MGP_CBAJ_G0027320	Chd1l	64	40.541