EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0033503 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 11710 bases
Position: chr8:90936241-90947950
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0089129	ResIII	PF04851.15	3.1e-05	1	1
MGP_CBAJ_P0089132	ResIII	PF04851.15	3.1e-05	1	1
MGP_CBAJ_P0089133	ResIII	PF04851.15	3.1e-05	1	1
MGP_CBAJ_P0089129	DEAD	PF00270.29	4.1e-38	1	1
MGP_CBAJ_P0089132	DEAD	PF00270.29	4.1e-38	1	1
MGP_CBAJ_P0089133	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0089129	-	1656	XM_006531332	MGP_CBAJ_P0089129	427 (aa)	XP_006531395	Q8VDW0
MGP_CBAJ_T0089134	-	754	-	-	- (aa)	-	-
MGP_CBAJ_T0089132	-	3858	-	MGP_CBAJ_P0089132	427 (aa)	-	-
MGP_CBAJ_T0089133	-	1793	-	MGP_CBAJ_P0089133	427 (aa)	-	-
MGP_CBAJ_T0089130	-	1927	-	-	- (aa)	-	-
MGP_CBAJ_T0089131	-	1551	-	MGP_CBAJ_P0089131	208 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0033503's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0033503's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0033503	Ddx39	100	90.888	MGP_CBAJ_G0023338	Ddx39b	100	90.888
MGP_CBAJ_G0033503	Ddx39	89	32.620	MGP_CBAJ_G0031075	Ddx47	90	32.095
MGP_CBAJ_G0033503	Ddx39	72	30.094	MGP_CBAJ_G0019033	Ddx5	52	30.094
MGP_CBAJ_G0033503	Ddx39	76	42.405	MGP_CBAJ_G0022380	Eif4a2	64	39.167
MGP_CBAJ_G0033503	Ddx39	74	34.969	MGP_CBAJ_G0017747	Ddx56	61	32.051
MGP_CBAJ_G0033503	Ddx39	84	39.655	MGP_CBAJ_G0018272	Eif4a1	93	36.441
MGP_CBAJ_G0033503	Ddx39	90	30.392	MGP_CBAJ_G0035227	Ddx3x	56	31.565
MGP_CBAJ_G0033503	Ddx39	81	30.312	MGP_CBAJ_G0016154	Ddx18	51	30.769
MGP_CBAJ_G0033503	Ddx39	86	37.931	MGP_CBAJ_G0019198	Eif4a3	89	37.197
MGP_CBAJ_G0033503	Ddx39	54	39.252	MGP_CBAJ_G0033791	Ddx19b	73	34.921
MGP_CBAJ_G0033503	Ddx39	90	30.392	MGP_CBAJ_G0016656	D1Pas1	57	31.565
MGP_CBAJ_G0033503	Ddx39	85	31.183	MGP_CBAJ_G0034191	Ddx25	81	31.328
MGP_CBAJ_G0033503	Ddx39	87	33.156	MGP_CBAJ_G0033366	Ddx49	97	33.333
MGP_CBAJ_G0033503	Ddx39	90	34.074	MGP_CBAJ_G0027395	Ddx20	50	34.140