EuRBPDB

Description

Ensembl ID: MGP_CBAJ_G0034128 (Gene tree)
Gene ID: -
Gene Symbol: Elavl3
Alias: 2600009P04Rik|Huc|PLE21|mHuC
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 3 (Hu antigen C)
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 42333 bases
Position: chr9:20843360-20885692
Accession: 109157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0090988	RRM_5	PF13893.6	4.1e-13	1	2
MGP_CBAJ_P0090988	RRM_5	PF13893.6	4.1e-13	2	2
MGP_CBAJ_P0090988	RRM_1	PF00076.22	5.3e-64	1	3
MGP_CBAJ_P0090988	RRM_1	PF00076.22	5.3e-64	2	3
MGP_CBAJ_P0090988	RRM_1	PF00076.22	5.3e-64	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0090989	-	1014	-	MGP_CBAJ_P0090989	337 (aa)	-	-
MGP_CBAJ_T0090988	-	5011	XM_006510021	MGP_CBAJ_P0090988	367 (aa)	XP_006510084	Q60900

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0034128	Elavl3	66	34.118	MGP_CBAJ_G0033470	-	59	33.708
MGP_CBAJ_G0034128	Elavl3	100	78.400	MGP_CBAJ_G0028108	Elavl2	100	79.292
MGP_CBAJ_G0034128	Elavl3	90	34.940	MGP_CBAJ_G0024072	Pabpc2	61	34.940
MGP_CBAJ_G0034128	Elavl3	73	40.741	MGP_CBAJ_G0025044	Celf2	82	34.667
MGP_CBAJ_G0034128	Elavl3	99	80.323	MGP_CBAJ_G0028241	Elavl4	99	79.893
MGP_CBAJ_G0034128	Elavl3	50	36.207	MGP_CBAJ_G0025476	Rbms1	51	33.645
MGP_CBAJ_G0034128	Elavl3	69	33.708	MGP_CBAJ_G0035395	Rbmx	86	33.708
MGP_CBAJ_G0034128	Elavl3	59	30.488	MGP_CBAJ_G0026528	Pabpc1l	63	38.889
MGP_CBAJ_G0034128	Elavl3	80	41.975	MGP_CBAJ_G0034556	Celf6	57	42.308
MGP_CBAJ_G0034128	Elavl3	90	37.179	MGP_CBAJ_G0030638	Tia1	98	31.169
MGP_CBAJ_G0034128	Elavl3	90	36.145	MGP_CBAJ_G0026882	Pabpc4l	96	36.145
MGP_CBAJ_G0034128	Elavl3	92	36.145	MGP_CBAJ_G0021507	-	57	36.145
MGP_CBAJ_G0034128	Elavl3	71	42.391	MGP_CBAJ_G0025836	Celf1	57	43.590
MGP_CBAJ_G0034128	Elavl3	92	36.145	MGP_CBAJ_G0022842	Pabpc6	61	36.145
MGP_CBAJ_G0034128	Elavl3	92	32.941	MGP_CBAJ_G0028401	Pabpc4	100	33.824
MGP_CBAJ_G0034128	Elavl3	89	34.940	MGP_CBAJ_G0027235	Celf3	98	35.632
MGP_CBAJ_G0034128	Elavl3	90	66.867	MGP_CBAJ_G0033001	Elavl1	95	66.265
MGP_CBAJ_G0034128	Elavl3	90	37.179	MGP_CBAJ_G0032753	Tial1	73	37.179
MGP_CBAJ_G0034128	Elavl3	62	37.500	MGP_CBAJ_G0017221	Cirbp	79	37.500
MGP_CBAJ_G0034128	Elavl3	70	39.506	MGP_CBAJ_G0023910	Celf4	67	39.744
MGP_CBAJ_G0034128	Elavl3	63	37.931	MGP_CBAJ_G0035052	Rbms3	70	38.562