EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0034556 (Gene tree)
Gene ID: -
Gene Symbol: Celf6
Alias: 6330569O16Rik|Brunol6
Full Name: CUGBP%2C Elav-like family member 6
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 41274 bases
Position: chr9:62703634-62744907
Accession: 1923433
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0092163	RRM_1	PF00076.22	2.1e-51	1	3
MGP_CBAJ_P0092163	RRM_1	PF00076.22	2.1e-51	2	3
MGP_CBAJ_P0092163	RRM_1	PF00076.22	2.1e-51	3	3
MGP_CBAJ_P0092161	RRM_1	PF00076.22	2.6e-51	1	3
MGP_CBAJ_P0092161	RRM_1	PF00076.22	2.6e-51	2	3
MGP_CBAJ_P0092161	RRM_1	PF00076.22	2.6e-51	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0092161	-	2947	-	MGP_CBAJ_P0092161	481 (aa)	-	-
MGP_CBAJ_T0092160	-	3051	XM_006511540	MGP_CBAJ_P0092160	182 (aa)	XP_006511603	Q7TN33
MGP_CBAJ_T0092163	-	4573	-	MGP_CBAJ_P0092163	460 (aa)	-	-
MGP_CBAJ_T0092162	-	2898	-	MGP_CBAJ_P0092162	162 (aa)	-	-
MGP_CBAJ_T0092165	-	591	-	-	- (aa)	-	-
MGP_CBAJ_T0092164	-	449	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0034556's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0034556's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0034556	Celf6	77	39.062	MGP_CBAJ_G0022842	Pabpc6	64	39.062
MGP_CBAJ_G0034556	Celf6	91	45.549	MGP_CBAJ_G0025836	Celf1	98	45.135
MGP_CBAJ_G0034556	Celf6	95	35.802	MGP_CBAJ_G0028241	Elavl4	85	40.741
MGP_CBAJ_G0034556	Celf6	52	42.105	MGP_CBAJ_G0035052	Rbms3	82	42.105
MGP_CBAJ_G0034556	Celf6	75	85.526	MGP_CBAJ_G0027235	Celf3	81	87.368
MGP_CBAJ_G0034556	Celf6	68	37.113	MGP_CBAJ_G0028401	Pabpc4	67	35.211
MGP_CBAJ_G0034556	Celf6	75	85.401	MGP_CBAJ_G0017295	Celf5	95	60.477
MGP_CBAJ_G0034556	Celf6	89	37.037	MGP_CBAJ_G0028108	Elavl2	78	40.741
MGP_CBAJ_G0034556	Celf6	79	31.250	MGP_CBAJ_G0030402	Hnrnpa2b1	66	32.143
MGP_CBAJ_G0034556	Celf6	51	34.483	MGP_CBAJ_G0035698	Pabpc5	63	34.483
MGP_CBAJ_G0034556	Celf6	54	35.802	MGP_CBAJ_G0017581	Rbms2	50	35.802
MGP_CBAJ_G0034556	Celf6	91	45.567	MGP_CBAJ_G0025044	Celf2	79	80.952
MGP_CBAJ_G0034556	Celf6	54	31.818	MGP_CBAJ_G0032753	Tial1	53	32.143
MGP_CBAJ_G0034556	Celf6	57	42.308	MGP_CBAJ_G0034128	Elavl3	80	41.975
MGP_CBAJ_G0034556	Celf6	66	32.500	MGP_CBAJ_G0017995	Hnrnpab	65	31.414
MGP_CBAJ_G0034556	Celf6	57	44.444	MGP_CBAJ_G0033001	Elavl1	97	44.444
MGP_CBAJ_G0034556	Celf6	62	32.955	MGP_CBAJ_G0030638	Tia1	85	36.000
MGP_CBAJ_G0034556	Celf6	100	67.200	MGP_CBAJ_G0023910	Celf4	99	67.066