EuRBPDB

Description

Ensembl ID: MGP_CBAJ_G0034763 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Minus strand
Length: 35527 bases
Position: chr9:94948147-94983673
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0093051	RRM_5	PF13893.6	2.5e-06	1	1
MGP_CBAJ_P0093054	RRM_5	PF13893.6	3.2e-06	1	1
MGP_CBAJ_P0093052	RRM_5	PF13893.6	4.7e-06	1	1
MGP_CBAJ_P0093049	RRM_5	PF13893.6	4.8e-06	1	1
MGP_CBAJ_P0093055	RRM_5	PF13893.6	6.1e-06	1	1
MGP_CBAJ_P0093052	RRM_1	PF00076.22	3e-44	1	3
MGP_CBAJ_P0093052	RRM_1	PF00076.22	3e-44	2	3
MGP_CBAJ_P0093052	RRM_1	PF00076.22	3e-44	3	3
MGP_CBAJ_P0093049	RRM_1	PF00076.22	3e-44	1	3
MGP_CBAJ_P0093049	RRM_1	PF00076.22	3e-44	2	3
MGP_CBAJ_P0093049	RRM_1	PF00076.22	3e-44	3	3
MGP_CBAJ_P0093055	RRM_1	PF00076.22	4.6e-44	1	3
MGP_CBAJ_P0093055	RRM_1	PF00076.22	4.6e-44	2	3
MGP_CBAJ_P0093055	RRM_1	PF00076.22	4.6e-44	3	3
MGP_CBAJ_P0093051	RRM_1	PF00076.22	8.3e-43	1	3
MGP_CBAJ_P0093051	RRM_1	PF00076.22	8.3e-43	2	3
MGP_CBAJ_P0093051	RRM_1	PF00076.22	8.3e-43	3	3
MGP_CBAJ_P0093054	RRM_1	PF00076.22	1.3e-42	1	3
MGP_CBAJ_P0093054	RRM_1	PF00076.22	1.3e-42	2	3
MGP_CBAJ_P0093054	RRM_1	PF00076.22	1.3e-42	3	3
MGP_CBAJ_P0093050	RRM_1	PF00076.22	1.4e-31	1	2
MGP_CBAJ_P0093050	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0093056	-	549	-	-	- (aa)	-	-
MGP_CBAJ_T0093057	-	766	-	MGP_CBAJ_P0093057	196 (aa)	-	-
MGP_CBAJ_T0093054	-	1767	-	MGP_CBAJ_P0093054	588 (aa)	-	-
MGP_CBAJ_T0093055	-	2038	-	MGP_CBAJ_P0093055	623 (aa)	-	-
MGP_CBAJ_T0093052	-	3404	-	MGP_CBAJ_P0093052	561 (aa)	-	-
MGP_CBAJ_T0093053	-	1925	-	MGP_CBAJ_P0093053	67 (aa)	-	-
MGP_CBAJ_T0093050	-	3175	-	MGP_CBAJ_P0093050	448 (aa)	-	-
MGP_CBAJ_T0093051	-	3286	-	MGP_CBAJ_P0093051	527 (aa)	-	-
MGP_CBAJ_T0093049	-	9416	XM_006511293	MGP_CBAJ_P0093049	562 (aa)	XP_006511356	Q7TMK9
MGP_CBAJ_T0093058	-	2384	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0034763	Syncrip	75	57.522	MGP_CBAJ_G0029256	Rbm47	88	58.451
MGP_CBAJ_G0034763	Syncrip	53	54.333	MGP_CBAJ_G0027021	Rbm46	63	55.000
MGP_CBAJ_G0034763	Syncrip	58	52.308	MGP_CBAJ_G0024747	A1cf	52	53.398
MGP_CBAJ_G0034763	Syncrip	87	81.911	MGP_CBAJ_G0028627	Hnrnpr	99	81.716