EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0034883 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp4
Alias: 1200003L19Rik|AlphaCP-4
Full Name: poly(rC) binding protein 4
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 18979 bases
Position: chr9:115173994-115192972
Accession: 1890471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0093643	KH_1	PF00013.29	3.4e-50	1	3
MGP_CBAJ_P0093643	KH_1	PF00013.29	3.4e-50	2	3
MGP_CBAJ_P0093643	KH_1	PF00013.29	3.4e-50	3	3
MGP_CBAJ_P0093642	KH_1	PF00013.29	2.7e-32	1	2
MGP_CBAJ_P0093642	KH_1	PF00013.29	2.7e-32	2	2
MGP_CBAJ_P0093648	KH_1	PF00013.29	1.5e-21	1	1
MGP_CBAJ_P0093639	KH_1	PF00013.29	1.3e-18	1	1
MGP_CBAJ_P0093641	KH_1	PF00013.29	2.3e-15	1	1
MGP_CBAJ_P0093645	KH_1	PF00013.29	1.2e-13	1	1
MGP_CBAJ_P0093650	KH_1	PF00013.29	5.4e-09	1	1
MGP_CBAJ_P0093642	KH_2	PF07650.17	8.2e-12	1	1
MGP_CBAJ_P0093639	KH_2	PF07650.17	2.3e-06	1	1
MGP_CBAJ_P0093641	KH_2	PF07650.17	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0093649	-	314	-	-	- (aa)	-	-
MGP_CBAJ_T0093648	-	770	-	MGP_CBAJ_P0093648	168 (aa)	-	-
MGP_CBAJ_T0093651	-	450	-	-	- (aa)	-	-
MGP_CBAJ_T0093643	-	1869	-	MGP_CBAJ_P0093643	403 (aa)	-	-
MGP_CBAJ_T0093642	-	818	-	MGP_CBAJ_P0093642	197 (aa)	-	-
MGP_CBAJ_T0093641	-	752	-	MGP_CBAJ_P0093641	113 (aa)	-	-
MGP_CBAJ_T0093640	-	477	-	-	- (aa)	-	-
MGP_CBAJ_T0093647	-	289	-	-	- (aa)	-	-
MGP_CBAJ_T0093646	-	846	-	MGP_CBAJ_P0093646	150 (aa)	-	-
MGP_CBAJ_T0093645	-	232	-	MGP_CBAJ_P0093645	77 (aa)	-	-
MGP_CBAJ_T0093644	-	253	-	-	- (aa)	-	-
MGP_CBAJ_T0093639	-	553	XM_006511779	MGP_CBAJ_P0093639	119 (aa)	XP_006511842	A0A087WP16
MGP_CBAJ_T0093650	-	924	-	MGP_CBAJ_P0093650	215 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0034883's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0034883's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0034883	Pcbp4	97	67.826	MGP_CBAJ_G0030641	Pcbp1	98	53.541
MGP_CBAJ_G0034883	Pcbp4	51	38.462	MGP_CBAJ_G0019432	Nova1	52	38.462
MGP_CBAJ_G0034883	Pcbp4	86	32.468	MGP_CBAJ_G0020342	Hnrnpk	62	41.429
MGP_CBAJ_G0034883	Pcbp4	76	41.538	MGP_CBAJ_G0031414	-	54	41.538
MGP_CBAJ_G0034883	Pcbp4	76	33.684	MGP_CBAJ_G0027664	Fubp1	72	34.524
MGP_CBAJ_G0034883	Pcbp4	93	70.652	MGP_CBAJ_G0017123	Pcbp3	85	69.811
MGP_CBAJ_G0034883	Pcbp4	86	31.551	MGP_CBAJ_G0032121	-	77	31.551
MGP_CBAJ_G0034883	Pcbp4	98	66.321	MGP_CBAJ_G0022117	Pcbp2	97	59.877
MGP_CBAJ_G0034883	Pcbp4	85	31.731	MGP_CBAJ_G0022369	Igf2bp2	62	31.111
MGP_CBAJ_G0034883	Pcbp4	83	36.000	MGP_CBAJ_G0025298	Fubp3	70	36.000
MGP_CBAJ_G0034883	Pcbp4	84	32.039	MGP_CBAJ_G0018719	Igf2bp1	59	30.597
MGP_CBAJ_G0034883	Pcbp4	76	32.323	MGP_CBAJ_G0023648	Khsrp	54	34.091