EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_CBAJ_G0035698 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_cbaj
Status: putative
Strand: Plus strand
Length: 4299 bases
Position: chrX:124054484-124058782
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CBAJ_P0096789	RRM_5	PF13893.6	7.2e-12	1	2
MGP_CBAJ_P0096789	RRM_5	PF13893.6	7.2e-12	2	2
MGP_CBAJ_P0096790	RRM_5	PF13893.6	7.2e-12	1	2
MGP_CBAJ_P0096790	RRM_5	PF13893.6	7.2e-12	2	2
MGP_CBAJ_P0096789	RRM_1	PF00076.22	1.1e-77	1	4
MGP_CBAJ_P0096789	RRM_1	PF00076.22	1.1e-77	2	4
MGP_CBAJ_P0096789	RRM_1	PF00076.22	1.1e-77	3	4
MGP_CBAJ_P0096789	RRM_1	PF00076.22	1.1e-77	4	4
MGP_CBAJ_P0096790	RRM_1	PF00076.22	1.1e-77	1	4
MGP_CBAJ_P0096790	RRM_1	PF00076.22	1.1e-77	2	4
MGP_CBAJ_P0096790	RRM_1	PF00076.22	1.1e-77	3	4
MGP_CBAJ_P0096790	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CBAJ_T0096789	-	2415	-	MGP_CBAJ_P0096789	381 (aa)	-	Q8C7D3
MGP_CBAJ_T0096790	-	2224	-	MGP_CBAJ_P0096790	381 (aa)	-	-

Gene Model

Click here to download MGP_CBAJ_G0035698's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CBAJ_G0035698's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CBAJ_G0035698	Pabpc5	94	65.470	MGP_CBAJ_G0028401	Pabpc4	100	70.874
MGP_CBAJ_G0035698	Pabpc5	96	61.111	MGP_CBAJ_G0024072	Pabpc2	62	60.955
MGP_CBAJ_G0035698	Pabpc5	96	56.944	MGP_CBAJ_G0026528	Pabpc1l	64	57.022
MGP_CBAJ_G0035698	Pabpc5	96	57.967	MGP_CBAJ_G0026882	Pabpc4l	97	57.865
MGP_CBAJ_G0035698	Pabpc5	96	65.057	MGP_CBAJ_G0021507	-	57	65.217
MGP_CBAJ_G0035698	Pabpc5	94	37.037	MGP_CBAJ_G0028108	Elavl2	89	37.037
MGP_CBAJ_G0035698	Pabpc5	63	34.483	MGP_CBAJ_G0034556	Celf6	51	34.483
MGP_CBAJ_G0035698	Pabpc5	93	33.333	MGP_CBAJ_G0030638	Tia1	84	34.247
MGP_CBAJ_G0035698	Pabpc5	95	58.445	MGP_CBAJ_G0022842	Pabpc6	59	58.470