EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0017228 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp3
Alias: AlphaCP-3
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 195045 bases
Position: chr10:73659789-73854833
Accession: 1890470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0025658	KH_1	PF00013.29	2.9e-55	1	3
MGP_DBA2J_P0025658	KH_1	PF00013.29	2.9e-55	2	3
MGP_DBA2J_P0025658	KH_1	PF00013.29	2.9e-55	3	3
MGP_DBA2J_P0025655	KH_1	PF00013.29	3e-55	1	3
MGP_DBA2J_P0025655	KH_1	PF00013.29	3e-55	2	3
MGP_DBA2J_P0025655	KH_1	PF00013.29	3e-55	3	3
MGP_DBA2J_P0025657	KH_1	PF00013.29	3e-55	1	3
MGP_DBA2J_P0025657	KH_1	PF00013.29	3e-55	2	3
MGP_DBA2J_P0025657	KH_1	PF00013.29	3e-55	3	3
MGP_DBA2J_P0025660	KH_1	PF00013.29	7.7e-19	1	1
MGP_DBA2J_P0025658	KH_2	PF07650.17	3.9e-15	1	1
MGP_DBA2J_P0025655	KH_2	PF07650.17	3.9e-15	1	1
MGP_DBA2J_P0025657	KH_2	PF07650.17	3.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0025662	-	717	-	-	- (aa)	-	-
MGP_DBA2J_T0025663	-	337	-	-	- (aa)	-	-
MGP_DBA2J_T0025660	-	605	-	MGP_DBA2J_P0025660	160 (aa)	-	-
MGP_DBA2J_T0025661	-	944	-	MGP_DBA2J_P0025661	226 (aa)	-	-
MGP_DBA2J_T0025657	-	1748	-	MGP_DBA2J_P0025657	371 (aa)	-	-
MGP_DBA2J_T0025656	-	1736	-	-	- (aa)	-	-
MGP_DBA2J_T0025655	-	2013	XM_006513916	MGP_DBA2J_P0025655	371 (aa)	XP_006513979	P57722
MGP_DBA2J_T0025659	-	1095	-	-	- (aa)	-	-
MGP_DBA2J_T0025658	-	2544	-	MGP_DBA2J_P0025658	370 (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0017228's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0017228's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0017228	Pcbp3	72	40.351	MGP_DBA2J_G0019545	Nova1	59	40.351
MGP_DBA2J_G0017228	Pcbp3	99	65.873	MGP_DBA2J_G0030797	Pcbp1	99	66.484
MGP_DBA2J_G0017228	Pcbp3	85	69.811	MGP_DBA2J_G0035044	Pcbp4	93	70.652
MGP_DBA2J_G0017228	Pcbp3	66	33.582	MGP_DBA2J_G0018827	Igf2bp1	60	33.333
MGP_DBA2J_G0017228	Pcbp3	86	35.000	MGP_DBA2J_G0030539	Igf2bp3	59	33.813
MGP_DBA2J_G0017228	Pcbp3	99	82.143	MGP_DBA2J_G0022248	Pcbp2	99	78.338
MGP_DBA2J_G0017228	Pcbp3	85	31.973	MGP_DBA2J_G0025431	Fubp3	77	31.973
MGP_DBA2J_G0017228	Pcbp3	66	31.250	MGP_DBA2J_G0027804	Fubp1	72	33.019
MGP_DBA2J_G0017228	Pcbp3	89	36.765	MGP_DBA2J_G0022501	Igf2bp2	62	33.333
MGP_DBA2J_G0017228	Pcbp3	79	41.667	MGP_DBA2J_G0020465	Hnrnpk	60	51.316