EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_DBA2J_G0017857 (Gene tree)
Gene ID: -
Gene Symbol: Ddx56
Alias: 2600001H07Rik|D11Ertd619e|NOH61|Noh61
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 8854 bases
Position: chr11:3137062-3145915
Accession: 1277172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0027771	ResIII	PF04851.15	9.5e-07	1	1
MGP_DBA2J_P0027771	DEAD	PF00270.29	6.9e-40	1	1
MGP_DBA2J_P0027773	DEAD	PF00270.29	5.8e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0027772	-	527	-	-	- (aa)	-	-
MGP_DBA2J_T0027773	-	764	-	MGP_DBA2J_P0027773	237 (aa)	-	-
MGP_DBA2J_T0027771	-	1956	XM_011243731	MGP_DBA2J_P0027771	546 (aa)	XP_011242033	Q9D0R4
MGP_DBA2J_T0027774	-	621	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_DBA2J_G0017857's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_DBA2J_G0017857's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0017857	Ddx56	94	32.627	MGP_DBA2J_G0033520	Ddx49	59	33.175
MGP_DBA2J_G0017857	Ddx56	82	50.000	MGP_DBA2J_G0019437	Ddx1	53	50.847
MGP_DBA2J_G0017857	Ddx56	66	30.366	MGP_DBA2J_G0035380	Ddx3x	52	30.000
MGP_DBA2J_G0017857	Ddx56	66	30.789	MGP_DBA2J_G0016762	D1Pas1	52	30.159
MGP_DBA2J_G0017857	Ddx56	61	32.051	MGP_DBA2J_G0033656	Ddx39	74	34.969
MGP_DBA2J_G0017857	Ddx56	80	33.493	MGP_DBA2J_G0018696	Ddx52	61	30.597
MGP_DBA2J_G0017857	Ddx56	95	31.855	MGP_DBA2J_G0033946	Ddx19b	71	30.151
MGP_DBA2J_G0017857	Ddx56	98	33.065	MGP_DBA2J_G0026739	Ddx27	53	31.019
MGP_DBA2J_G0017857	Ddx56	97	30.041	MGP_DBA2J_G0018381	Eif4a1	87	30.051
MGP_DBA2J_G0017857	Ddx56	97	30.328	MGP_DBA2J_G0022512	Eif4a2	63	30.736
MGP_DBA2J_G0017857	Ddx56	99	35.887	MGP_DBA2J_G0031233	Ddx47	86	38.889