EuRBPDB

Description

Ensembl ID: MGP_DBA2J_G0018102 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpab
Alias: 3010025C11Rik|CBF-A|Cbf-a|Cgbfa|Hnrpab|Hnrpab {ECO:0000313|EMBL:EDL33661.1,GN ECO:0000313|MGI:MGI:1330294}|Hnrpab {ECO:0000313|EMBL:EDL33663.1,GN ECO:0000313|MGI:MGI:1330294}
Full Name: heterogeneous nuclear ribonucleoprotein A/B
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 6738 bases
Position: chr11:48643499-48650236
Accession: 1330294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0028753	CBFNT	PF08143.11	3.2e-19	1	1
MGP_DBA2J_P0028754	CBFNT	PF08143.11	3.7e-19	1	1
MGP_DBA2J_P0028755	CBFNT	PF08143.11	4.2e-19	1	1
MGP_DBA2J_P0028753	RRM_1	PF00076.22	6.4e-34	1	2
MGP_DBA2J_P0028753	RRM_1	PF00076.22	6.4e-34	2	2
MGP_DBA2J_P0028754	RRM_1	PF00076.22	8.5e-34	1	2
MGP_DBA2J_P0028754	RRM_1	PF00076.22	8.5e-34	2	2
MGP_DBA2J_P0028755	RRM_1	PF00076.22	1e-33	1	2
MGP_DBA2J_P0028755	RRM_1	PF00076.22	1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0028753	-	2364	-	MGP_DBA2J_P0028753	285 (aa)	-	Q99020
MGP_DBA2J_T0028755	-	1437	-	MGP_DBA2J_P0028755	332 (aa)	-	-
MGP_DBA2J_T0028754	-	2016	-	MGP_DBA2J_P0028754	311 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0018102	Hnrnpab	57	35.882	MGP_DBA2J_G0020459	Hnrnpa0	58	35.882
MGP_DBA2J_G0018102	Hnrnpab	64	37.368	MGP_DBA2J_G0030552	Hnrnpa2b1	61	38.068
MGP_DBA2J_G0018102	Hnrnpab	70	48.039	MGP_DBA2J_G0018758	Msi2	100	52.212
MGP_DBA2J_G0018102	Hnrnpab	79	72.052	MGP_DBA2J_G0029593	Hnrnpd	100	88.000
MGP_DBA2J_G0018102	Hnrnpab	82	58.419	MGP_DBA2J_G0029595	Hnrnpdl	89	57.292
MGP_DBA2J_G0018102	Hnrnpab	55	33.846	MGP_DBA2J_G0020675	Gm17190	52	34.351
MGP_DBA2J_G0018102	Hnrnpab	82	32.099	MGP_DBA2J_G0028942	Tardbp	86	33.146
MGP_DBA2J_G0018102	Hnrnpab	67	40.351	MGP_DBA2J_G0017333	Dazap1	99	40.588
MGP_DBA2J_G0018102	Hnrnpab	53	33.333	MGP_DBA2J_G0033155	Elavl1	50	33.333
MGP_DBA2J_G0018102	Hnrnpab	79	40.800	MGP_DBA2J_G0029782	Msi1	58	48.052
MGP_DBA2J_G0018102	Hnrnpab	51	33.846	MGP_DBA2J_G0019816	Slirp	73	33.846
MGP_DBA2J_G0018102	Hnrnpab	65	31.414	MGP_DBA2J_G0034715	Celf6	66	32.500