EuRBPDB

Description

Ensembl ID: MGP_DBA2J_G0020465 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpk
Alias: Hnrpk|Hnrpk {ECO:0000313|EMBL:AAH89328.1,GN ECO:0000313|MGI:MGI:99894}|KBBP|NOVA|hnRNPK
Full Name: heterogeneous nuclear ribonucleoprotein K
Gene Type: protein_coding
Species: Mus_musculus_dba2j
Status: putative
Strand: Minus strand
Length: 14952 bases
Position: chr13:55425319-55440270
Accession: 99894
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_DBA2J_P0037047	KH_1	PF00013.29	2.1e-43	1	3
MGP_DBA2J_P0037047	KH_1	PF00013.29	2.1e-43	2	3
MGP_DBA2J_P0037047	KH_1	PF00013.29	2.1e-43	3	3
MGP_DBA2J_P0037050	KH_1	PF00013.29	2.1e-43	1	3
MGP_DBA2J_P0037050	KH_1	PF00013.29	2.1e-43	2	3
MGP_DBA2J_P0037050	KH_1	PF00013.29	2.1e-43	3	3
MGP_DBA2J_P0037046	KH_1	PF00013.29	2.7e-43	1	3
MGP_DBA2J_P0037046	KH_1	PF00013.29	2.7e-43	2	3
MGP_DBA2J_P0037046	KH_1	PF00013.29	2.7e-43	3	3
MGP_DBA2J_P0037049	KH_1	PF00013.29	2.7e-43	1	3
MGP_DBA2J_P0037049	KH_1	PF00013.29	2.7e-43	2	3
MGP_DBA2J_P0037049	KH_1	PF00013.29	2.7e-43	3	3
MGP_DBA2J_P0037048	KH_1	PF00013.29	2.1e-33	1	2
MGP_DBA2J_P0037048	KH_1	PF00013.29	2.1e-33	2	2
MGP_DBA2J_P0037055	KH_1	PF00013.29	1.1e-23	1	2
MGP_DBA2J_P0037055	KH_1	PF00013.29	1.1e-23	2	2
MGP_DBA2J_P0037052	KH_1	PF00013.29	1.6e-23	1	2
MGP_DBA2J_P0037052	KH_1	PF00013.29	1.6e-23	2	2
MGP_DBA2J_P0037058	KH_1	PF00013.29	2.9e-23	1	2
MGP_DBA2J_P0037058	KH_1	PF00013.29	2.9e-23	2	2
MGP_DBA2J_P0037060	KH_1	PF00013.29	3.3e-09	1	1
MGP_DBA2J_P0037062	KH_1	PF00013.29	6.6e-09	1	1
MGP_DBA2J_P0037057	KH_1	PF00013.29	3.4e-05	1	1
MGP_DBA2J_P0037062	KH_2	PF07650.17	0.00011	1	1
MGP_DBA2J_P0037057	KH_2	PF07650.17	0.00023	1	1
MGP_DBA2J_P0037057	ROKNT	PF08067.11	2e-27	1	1
MGP_DBA2J_P0037052	ROKNT	PF08067.11	3e-27	1	1
MGP_DBA2J_P0037062	ROKNT	PF08067.11	3.6e-27	1	1
MGP_DBA2J_P0037047	ROKNT	PF08067.11	7.4e-27	1	1
MGP_DBA2J_P0037050	ROKNT	PF08067.11	7.4e-27	1	1
MGP_DBA2J_P0037055	ROKNT	PF08067.11	1.9e-26	1	1
MGP_DBA2J_P0037046	ROKNT	PF08067.11	3.9e-26	1	1
MGP_DBA2J_P0037049	ROKNT	PF08067.11	3.9e-26	1	1
MGP_DBA2J_P0037058	ROKNT	PF08067.11	1.9e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_DBA2J_T0037055	-	900	-	MGP_DBA2J_P0037055	256 (aa)	-	-
MGP_DBA2J_T0037049	-	2321	-	MGP_DBA2J_P0037049	453 (aa)	-	-
MGP_DBA2J_T0037048	-	2230	-	MGP_DBA2J_P0037048	384 (aa)	-	-
MGP_DBA2J_T0037058	-	676	-	MGP_DBA2J_P0037058	178 (aa)	-	-
MGP_DBA2J_T0037059	-	833	-	-	- (aa)	-	-
MGP_DBA2J_T0037056	-	459	-	-	- (aa)	-	-
MGP_DBA2J_T0037057	-	723	-	MGP_DBA2J_P0037057	77 (aa)	-	-
MGP_DBA2J_T0037047	-	2211	-	MGP_DBA2J_P0037047	429 (aa)	-	-
MGP_DBA2J_T0037046	-	2555	XM_006517103	MGP_DBA2J_P0037046	453 (aa)	XP_006517166	P61979
MGP_DBA2J_T0037052	-	1004	-	MGP_DBA2J_P0037052	299 (aa)	-	-
MGP_DBA2J_T0037053	-	522	-	-	- (aa)	-	-
MGP_DBA2J_T0037050	-	2298	-	MGP_DBA2J_P0037050	429 (aa)	-	-
MGP_DBA2J_T0037051	-	1080	-	MGP_DBA2J_P0037051	359 (aa)	-	-
MGP_DBA2J_T0037063	-	780	-	-	- (aa)	-	-
MGP_DBA2J_T0037062	-	1053	-	MGP_DBA2J_P0037062	97 (aa)	-	-
MGP_DBA2J_T0037061	-	775	-	-	- (aa)	-	-
MGP_DBA2J_T0037060	-	476	-	MGP_DBA2J_P0037060	87 (aa)	-	-
MGP_DBA2J_T0037054	-	737	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_DBA2J_G0020465	Hnrnpk	78	31.724	MGP_DBA2J_G0030797	Pcbp1	85	42.857
MGP_DBA2J_G0020465	Hnrnpk	58	39.062	MGP_DBA2J_G0019545	Nova1	56	39.062
MGP_DBA2J_G0020465	Hnrnpk	60	51.316	MGP_DBA2J_G0017228	Pcbp3	79	41.667
MGP_DBA2J_G0020465	Hnrnpk	93	98.745	MGP_DBA2J_G0032276	-	98	98.745
MGP_DBA2J_G0020465	Hnrnpk	78	32.414	MGP_DBA2J_G0035044	Pcbp4	86	33.728
MGP_DBA2J_G0020465	Hnrnpk	57	38.462	MGP_DBA2J_G0031569	Nova2	53	38.462
MGP_DBA2J_G0020465	Hnrnpk	66	44.000	MGP_DBA2J_G0022248	Pcbp2	84	44.444
MGP_DBA2J_G0020465	Hnrnpk	55	36.923	MGP_DBA2J_G0027804	Fubp1	53	36.923